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The map label for this gene is rnb [H]

Identifier: 83721664

GI number: 83721664

Start: 1314928

End: 1316841

Strand: Direct

Name: rnb [H]

Synonym: BTH_I1170

Alternate gene names: 83721664

Gene position: 1314928-1316841 (Clockwise)

Preceding gene: 83719051

Following gene: 83719204

Centisome position: 34.52

GC content: 68.97

Gene sequence:

>1914_bases
ATGCAGCAGGCGGATGAAGCCGCCCAGCAGATCGATCTGGACTTTCTGTGGGAGTGCGCGCCCGCTGAGGAATTCGCGTA
TGCAACGCTCGCCGACGAGTATTTCGGCGCGAGCTACGGCCCCGTCGAGCGCGCGGCGCTCGTGCTGCGCCTGCACGGCG
CGCCCGTCTACTTCCGCCGCAAGGGGCGCGGCCAGTATCAGCGCGCGCCCGAGGAGCAGCTGAAAATGGCGCTCGCCGCG
CTCGAGCGCAAGCGCCAGCAGGCGCTCGTGCAGGCCGGCTACGAAGAGGAACTGAAGGCGGGCAGGCTGCCCGACGCGTT
CGCGGGCAAGGCGCTCGGCCTGCTGACGAGGCCGGACAAGAACTCGATCGAATACAAGGCGCTCGATGCGGCGGCGCTCG
CGCGCGGCGTGTCGCCCGCGCGTCTCCTGCTCGACTGCGGCGGCATTCCGTCGGCGCGCGCGTTGCATGAGGCGCGCTTT
CTCGCCGAGTACTTCCCGCACGGCACGGGCTTTCCGCCCGTCACGGTCGGCAAGCTGCCCGACGACCTGCCGCGCGCGGA
CGTCGACGCGTTCTCGATCGACGACGTCACGACGACCGAGATCGACGACGCGTTCTCCGTCGAGCATCTGTCCGATGGGC
GCGTGCGCATCGGCGTGCACATCGCGGCGCCCGCGCTCGGCGTCGTGCGCGGCGACGCGGTGGATGCGATCGCGCGCGCG
CGGCTGTCGACCGTCTACATGCCGGGCGACAAGATCACGATGCTGCCGGACGACGTGGTCGACGTGTTCACGCTGAAGGA
GGGCGGCTACCGCCCGGCGCTGTCGCTGTACATCATCGTGAAGCGCGACACGCAGGAGATCGTCGCGAACGAGACGCGGG
CCGAATTCGTCTATGTGAAGAGCAACCTGCGGCACAACACGCTCGACGGGCTCGTCACGGAAGACGCGCTCGCGGCGGGC
ACGGGCGACTATCCGCACAAGGACGATATCGCGGTGCTCTGGCCGCTCGCGCAGGCGCTCTTCGAGCGGCGCCAGGTCGC
GCGCGCGGGCTACGGGCTCAAACGCGAAGTGCAGCGCAATACCGATTACAACTTCTATGTCGAAGGCGAGCGCGTGTCGA
TCACGCCGCGCCGGCGCGGGTCGCCGCTCGATCTGATCGTGTCGGAACTCGCGATTCTCGCGAACTCGACGTGGGGCGCG
TTCCTGCACGATCACAGCGTGCCCGGCATCTATCGCACGCAGCGCGCGTTCGGCATGCCGAGCGGGCCGAAGCGCACGCG
GATGCAGACGAGCGCTGCGCCGCACGAGGGGCTCGGCGTGCCGCAGTATGCGTGGAGCACGTCGCCGCTGCGCCGTTACG
TCGACCTCGTCAATCAGTGGCAACTGCTCGCGTGCGTGCAGCACGGCGTGACCGCGAAGCTCGCCGCGCCGTTCAAGCAG
AAGGACGCGGATCTGTACGCGGTCGTGCAGGGTTTCGACGACACGTACGCCGCATACGCCGACCACCAGCGCCGGATGGA
GTATTTCTGGTGCCTGCGCTGGATCAAGCAGGAAGGCCGCAAGCAGGTGAGCGCGACCGTCGTGAAGGGCGAGCTCGTGC
GCCTCGACGACGTGCCGCTGCTGCTGCACGTGCCCGCGCTCGGCGTGCATGCGCGCGGCACGCGGGTGCTGCTCGATGTG
ATGTCGGTCGACGAATTGACGATCGAGGCGTCGGTGCGGCTTCTCAGCGTGCTCGATGCGCCGACGGTGTCGGGCGGCGA
GCCGTCGGACGATGAAGAGGACGCCGGCGCGGCCGACGACGTGCTGCTCGACGCCGCCGACGAATCGGCGGAAAGCGAAG
CGGAAGCGCTCGCCGAGGCGAGCGGCGGCGGCAATGGCGAATCGCCGGCGAACGGCGAGGAACAGTCGAAATGA

Upstream 100 bases:

>100_bases
GGGCGACGCGTTTCAGGTCGAATTGCCGGGCGGCCGGCGCGCGAAGGTGCGCGCGAAGGATGTGCTGATCGAATTCGAGA
AGCCCGCCGCGGGCGAACTG

Downstream 100 bases:

>100_bases
GCGCGGCCGTCGAACCGCTCGTGCGCGATCGCTACGCGGTGATCGGCAATCCGGTCGCGCACAGTAAATCGCCGTTCATT
CATGCGCGCTTCGCCGAGCA

Product: ribonuclease II

Products: NA

Alternate protein names: Exoribonuclease II; RNase II; Ribonuclease II [H]

Number of amino acids: Translated: 637; Mature: 637

Protein sequence:

>637_residues
MQQADEAAQQIDLDFLWECAPAEEFAYATLADEYFGASYGPVERAALVLRLHGAPVYFRRKGRGQYQRAPEEQLKMALAA
LERKRQQALVQAGYEEELKAGRLPDAFAGKALGLLTRPDKNSIEYKALDAAALARGVSPARLLLDCGGIPSARALHEARF
LAEYFPHGTGFPPVTVGKLPDDLPRADVDAFSIDDVTTTEIDDAFSVEHLSDGRVRIGVHIAAPALGVVRGDAVDAIARA
RLSTVYMPGDKITMLPDDVVDVFTLKEGGYRPALSLYIIVKRDTQEIVANETRAEFVYVKSNLRHNTLDGLVTEDALAAG
TGDYPHKDDIAVLWPLAQALFERRQVARAGYGLKREVQRNTDYNFYVEGERVSITPRRRGSPLDLIVSELAILANSTWGA
FLHDHSVPGIYRTQRAFGMPSGPKRTRMQTSAAPHEGLGVPQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKQ
KDADLYAVVQGFDDTYAAYADHQRRMEYFWCLRWIKQEGRKQVSATVVKGELVRLDDVPLLLHVPALGVHARGTRVLLDV
MSVDELTIEASVRLLSVLDAPTVSGGEPSDDEEDAGAADDVLLDAADESAESEAEALAEASGGGNGESPANGEEQSK

Sequences:

>Translated_637_residues
MQQADEAAQQIDLDFLWECAPAEEFAYATLADEYFGASYGPVERAALVLRLHGAPVYFRRKGRGQYQRAPEEQLKMALAA
LERKRQQALVQAGYEEELKAGRLPDAFAGKALGLLTRPDKNSIEYKALDAAALARGVSPARLLLDCGGIPSARALHEARF
LAEYFPHGTGFPPVTVGKLPDDLPRADVDAFSIDDVTTTEIDDAFSVEHLSDGRVRIGVHIAAPALGVVRGDAVDAIARA
RLSTVYMPGDKITMLPDDVVDVFTLKEGGYRPALSLYIIVKRDTQEIVANETRAEFVYVKSNLRHNTLDGLVTEDALAAG
TGDYPHKDDIAVLWPLAQALFERRQVARAGYGLKREVQRNTDYNFYVEGERVSITPRRRGSPLDLIVSELAILANSTWGA
FLHDHSVPGIYRTQRAFGMPSGPKRTRMQTSAAPHEGLGVPQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKQ
KDADLYAVVQGFDDTYAAYADHQRRMEYFWCLRWIKQEGRKQVSATVVKGELVRLDDVPLLLHVPALGVHARGTRVLLDV
MSVDELTIEASVRLLSVLDAPTVSGGEPSDDEEDAGAADDVLLDAADESAESEAEALAEASGGGNGESPANGEEQSK
>Mature_637_residues
MQQADEAAQQIDLDFLWECAPAEEFAYATLADEYFGASYGPVERAALVLRLHGAPVYFRRKGRGQYQRAPEEQLKMALAA
LERKRQQALVQAGYEEELKAGRLPDAFAGKALGLLTRPDKNSIEYKALDAAALARGVSPARLLLDCGGIPSARALHEARF
LAEYFPHGTGFPPVTVGKLPDDLPRADVDAFSIDDVTTTEIDDAFSVEHLSDGRVRIGVHIAAPALGVVRGDAVDAIARA
RLSTVYMPGDKITMLPDDVVDVFTLKEGGYRPALSLYIIVKRDTQEIVANETRAEFVYVKSNLRHNTLDGLVTEDALAAG
TGDYPHKDDIAVLWPLAQALFERRQVARAGYGLKREVQRNTDYNFYVEGERVSITPRRRGSPLDLIVSELAILANSTWGA
FLHDHSVPGIYRTQRAFGMPSGPKRTRMQTSAAPHEGLGVPQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKQ
KDADLYAVVQGFDDTYAAYADHQRRMEYFWCLRWIKQEGRKQVSATVVKGELVRLDDVPLLLHVPALGVHARGTRVLLDV
MSVDELTIEASVRLLSVLDAPTVSGGEPSDDEEDAGAADDVLLDAADESAESEAEALAEASGGGNGESPANGEEQSK

Specific function: Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction [H]

COG id: COG0557

COG function: function code K; Exoribonuclease R

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI1787542, Length=360, Percent_Identity=26.6666666666667, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011129
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR013223
- InterPro:   IPR001900
- InterPro:   IPR022966
- InterPro:   IPR004476
- InterPro:   IPR011804 [H]

Pfam domain/function: PF08206 OB_RNB; PF00773 RNB; PF00575 S1 [H]

EC number: =3.1.13.1 [H]

Molecular weight: Translated: 69694; Mature: 69694

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQADEAAQQIDLDFLWECAPAEEFAYATLADEYFGASYGPVERAALVLRLHGAPVYFRR
CCCHHHHHHHCCHHHEEECCCHHHHHHHHHHHHHHCCCCCCHHHEEEEEEECCCCEEEEE
KGRGQYQRAPEEQLKMALAALERKRQQALVQAGYEEELKAGRLPDAFAGKALGLLTRPDK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHCCCCEEEEECCCC
NSIEYKALDAAALARGVSPARLLLDCGGIPSARALHEARFLAEYFPHGTGFPPVTVGKLP
CCCEEHHHHHHHHHCCCCHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCC
DDLPRADVDAFSIDDVTTTEIDDAFSVEHLSDGRVRIGVHIAAPALGVVRGDAVDAIARA
CCCCCCCCCCEECCCCEECCCCCCCCHHCCCCCEEEEEEEEECCHHHHHCCHHHHHHHHH
RLSTVYMPGDKITMLPDDVVDVFTLKEGGYRPALSLYIIVKRDTQEIVANETRAEFVYVK
HHHEEEECCCEEEECCHHHEEEEEECCCCCCCEEEEEEEEECCHHHHHHCCCHHEEEEEE
SNLRHNTLDGLVTEDALAAGTGDYPHKDDIAVLWPLAQALFERRQVARAGYGLKREVQRN
CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
TDYNFYVEGERVSITPRRRGSPLDLIVSELAILANSTWGAFLHDHSVPGIYRTQRAFGMP
CCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHCCCC
SGPKRTRMQTSAAPHEGLGVPQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKQ
CCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
KDADLYAVVQGFDDTYAAYADHQRRMEYFWCLRWIKQEGRKQVSATVVKGELVRLDDVPL
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEEECCCCE
LLHVPALGVHARGTRVLLDVMSVDELTIEASVRLLSVLDAPTVSGGEPSDDEEDAGAADD
EEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
VLLDAADESAESEAEALAEASGGGNGESPANGEEQSK
HEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQQADEAAQQIDLDFLWECAPAEEFAYATLADEYFGASYGPVERAALVLRLHGAPVYFRR
CCCHHHHHHHCCHHHEEECCCHHHHHHHHHHHHHHCCCCCCHHHEEEEEEECCCCEEEEE
KGRGQYQRAPEEQLKMALAALERKRQQALVQAGYEEELKAGRLPDAFAGKALGLLTRPDK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHCCCCEEEEECCCC
NSIEYKALDAAALARGVSPARLLLDCGGIPSARALHEARFLAEYFPHGTGFPPVTVGKLP
CCCEEHHHHHHHHHCCCCHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCC
DDLPRADVDAFSIDDVTTTEIDDAFSVEHLSDGRVRIGVHIAAPALGVVRGDAVDAIARA
CCCCCCCCCCEECCCCEECCCCCCCCHHCCCCCEEEEEEEEECCHHHHHCCHHHHHHHHH
RLSTVYMPGDKITMLPDDVVDVFTLKEGGYRPALSLYIIVKRDTQEIVANETRAEFVYVK
HHHEEEECCCEEEECCHHHEEEEEECCCCCCCEEEEEEEEECCHHHHHHCCCHHEEEEEE
SNLRHNTLDGLVTEDALAAGTGDYPHKDDIAVLWPLAQALFERRQVARAGYGLKREVQRN
CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
TDYNFYVEGERVSITPRRRGSPLDLIVSELAILANSTWGAFLHDHSVPGIYRTQRAFGMP
CCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHCCCC
SGPKRTRMQTSAAPHEGLGVPQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKQ
CCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
KDADLYAVVQGFDDTYAAYADHQRRMEYFWCLRWIKQEGRKQVSATVVKGELVRLDDVPL
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEEECCCCE
LLHVPALGVHARGTRVLLDVMSVDELTIEASVRLLSVLDAPTVSGGEPSDDEEDAGAADD
EEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
VLLDAADESAESEAEALAEASGGGNGESPANGEEQSK
HEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA