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The map label for this gene is rarA [H]

Identifier: 83720479

GI number: 83720479

Start: 1765178

End: 1766488

Strand: Direct

Name: rarA [H]

Synonym: BTH_I1563

Alternate gene names: 83720479

Gene position: 1765178-1766488 (Clockwise)

Preceding gene: 83718722

Following gene: 83718513

Centisome position: 46.34

GC content: 68.34

Gene sequence:

>1311_bases
ATGTCCGACCTGTTTGCAGTCGAACCGCGCCGGCCGCTCGCCGAGGCGCTGCGCCCGAAGACGCTCGCCGACGTGATCGG
GCAGACGCATCTTCTCGGCGAAGGCAAGCCGCTCAAGCTCGCGTTCGAATCGGGCAAGCCGCATTCGATGATTCTCTGGG
GGCCGCCCGGCGTCGGCAAGACGACGCTCGCGCGCCTGACCGCGCTCGCGTTCGATTGCGAGTTCATCGCGCTGTCGGCG
GTGCTGGGCGGCGTGAAGGACATCCGCGAGGCGATGGAGCAGGCGCGCGACACGCTGAACCGCACCGGCCGCCACACGAT
CCTGTTCGTCGACGAAATCCATCGTTTCAACAAGGCGCAGCAGGACGCGCTGCTGCCGTTCGTCGAATCGGGGCTCGTCA
CGTTCATCGGCGCGACGACCGAGAACCCGAGCTTCGAGGTGAATTCGGCGCTGCTGTCGCGCGCGCAGGTGTATGTGCTG
AAGTCGCTGACGGAAGACGAGCTGCGCCAACTGCTCAAGCGCGCGCAGGACACGGCGCTCGACGGGCTCGCGTTCGACGA
CAAGGCGGTCGACACGCTCGTCGGCTACGCGGACGGCGATGCGCGGCGCTTTCTGAACCTGCTCGAGCAGGCCCAGACGG
CGGCTTCGTCCGCGGGCGTGACGACGATCGACGCGGCGTTCGTCGAGAGCGCGATGACGATGAACGCGCGCCGCTTCGAC
AAGGGCGGCGACAACTTCTATGACCAGATCTCCGCGCTGCACAAGTCGGTGCGCGGATCGAGCCCGGACGGCGCGCTGTA
CTGGCTGTGCCGGATGCTCGACGGCGGCGCGGACCCGAAGTACCTCGCGCGGCGCGTCGTGCGGATGGCGTGGGAGGACA
TCGGCCTGGCCGATCCGCGCGCGATGCAGATCGCGAACGATGCGGCGCAGACCTACGAGCGGCTCGGCTCGCCGGAGGGC
GAGCTCGCGCTCGCGCAGGCGGTGCTCTACCTCGCGTGCGCGGCGAAAAGCAACGCCGGCTACAACGCGTACAACGAGGC
GATGGCGTTCGTGCGGCAGGACAAGTCGCGCGAGGTGCCGGTGCATCTGCGCAACGCGCCGACGAAACTGATGAAGGAAC
TCGGCTACGGCCACGCGTACCGCTACGCGCACGACGAGCCGAACGCATACGCGGCGGGCGAGACGTACTTGCCGGACGGC
ATGGGCGAGCCGCGCTGGTACAAGCCGGTGCCGCGCGGGCTCGAGACGAAGATCGCGGACAAGCTCGCCTGGTTGCGCGA
GCTCGACCGCGAAGCGGGCAAGAACGACTAG

Upstream 100 bases:

>100_bases
CGGTTCGGGCCGCCGTGGCGTTGCGCCGCGCGGCTGTCATAATGTCCGGTCGGGCGGCGAATGCGCGCCGCCATCGCTTT
TTTCGTGGGAGCCAAGGTCC

Downstream 100 bases:

>100_bases
CGGCGCCGACGCGGGGGGGCGGGCGTCGCCGTCCGTCGGTTCAGCGTTTGCGCGCCGGCTGCTGCTTCCAGTAGCCGAAC
GGCTCCTGATGGCAATCGAT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLKLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSA
VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
KSLTEDELRQLLKRAQDTALDGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTIDAAFVESAMTMNARRFD
KGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPRAMQIANDAAQTYERLGSPEG
ELALAQAVLYLACAAKSNAGYNAYNEAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDG
MGEPRWYKPVPRGLETKIADKLAWLRELDREAGKND

Sequences:

>Translated_436_residues
MSDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLKLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSA
VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
KSLTEDELRQLLKRAQDTALDGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTIDAAFVESAMTMNARRFD
KGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPRAMQIANDAAQTYERLGSPEG
ELALAQAVLYLACAAKSNAGYNAYNEAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDG
MGEPRWYKPVPRGLETKIADKLAWLRELDREAGKND
>Mature_435_residues
SDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLKLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSAV
LGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLK
SLTEDELRQLLKRAQDTALDGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTIDAAFVESAMTMNARRFDK
GGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPRAMQIANDAAQTYERLGSPEGE
LALAQAVLYLACAAKSNAGYNAYNEAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGM
GEPRWYKPVPRGLETKIADKLAWLRELDREAGKND

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=432, Percent_Identity=43.9814814814815, Blast_Score=322, Evalue=3e-88,
Organism=Homo sapiens, GI18426904, Length=432, Percent_Identity=40.0462962962963, Blast_Score=271, Evalue=1e-72,
Organism=Escherichia coli, GI1787119, Length=442, Percent_Identity=54.0723981900452, Blast_Score=459, Evalue=1e-130,
Organism=Escherichia coli, GI1786676, Length=267, Percent_Identity=30.3370786516854, Blast_Score=82, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6324111, Length=409, Percent_Identity=42.0537897310513, Blast_Score=293, Evalue=5e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47940; Mature: 47809

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLKLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCCHHHHHHCCHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCHHH
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTEDELRQLLKRAQDTAL
HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
DGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTIDAAFVESAMTMNARRFD
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
KGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
AMQIANDAAQTYERLGSPEGELALAQAVLYLACAAKSNAGYNAYNEAMAFVRQDKSREVP
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
VHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGMGEPRWYKPVPRGLETKIAD
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
KLAWLRELDREAGKND
HHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLKLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCHHHHHHCCHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCHHH
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTEDELRQLLKRAQDTAL
HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
DGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTIDAAFVESAMTMNARRFD
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
KGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
AMQIANDAAQTYERLGSPEGELALAQAVLYLACAAKSNAGYNAYNEAMAFVRQDKSREVP
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
VHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGMGEPRWYKPVPRGLETKIAD
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
KLAWLRELDREAGKND
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]