Click here to switch to the map view.

The map label for this gene is glcD [H]

Identifier: 83718880

GI number: 83718880

Start: 1442971

End: 1444464

Strand: Reverse

Name: glcD [H]

Synonym: BTH_I1291

Alternate gene names: 83718880

Gene position: 1444464-1442971 (Counterclockwise)

Preceding gene: 83719815

Following gene: 83721183

Centisome position: 37.92

GC content: 69.41

Gene sequence:

>1494_bases
ATGAACGCCCCCGCCGAACTGTCGGCCGATCTGCGCGCGCAGCGCCAGCGCGAAGTCGTGCAGGCGCTGATGGCCGTGCT
GCCGACCCACTGCCTGCTGCATCGCGACGAGGACACGGCCGCGTACGAATGCGACGCGCTGTCCGCATACCGCCGGCTGC
CGCTCGCGGTCGCGCTGCCGGAGACCGAATCGCAGGTGCAGCGGATCGTGCAGATCTGCCGGCGCATGGACGTGCCGATC
GTGCCGCGCGGCGCGGGCACGAGCCTGTCGGGCGGCGCGCTGCCGATCGGGCACGGCGTCGTGCTGTCGCTCGCGCGTTT
CACGCGGATCGTCGAAGTCGATTCCTATGCGCGCACGGCCACCGTTCAGCCCGGCGTACGCAATCTCGCGATCTCCGAGG
CCGCCGCGCCGTACGGCCTCTACTACGCGCCCGACCCTTCGTCGCAGATCGCGTGCACGATCGGCGGCAACGTGTCCGAG
AACTCGGGCGGCGTCCATTGCCTGAAATACGGGCTCACGTGCCACAACGTGCTGCGCGTGCGCGGCGTGACGATCGACGG
CGAGATCGTCGAATTCGGCTCGCTCGCGCCCGACGCGCCCGGCCTCGATCTGCTCGCCGTCACGATCGGCAGCGAAGGCA
TGTTCATCGTCGTCACCGAGGTCACGGTGCGCCTGATTCCGAAGCCGCAGTGCGCGCAGCTCGTGATGGCGAGCTTCGAC
GACGTCGTCAAGGGCGGCGAGGCCGTCGCCGCGATCATCGCGTCGGGCATCATACCGGCCGGCCTCGAAATGATGGACAA
GCCGGCGACGCAGGCGGTCGAGGCGTTCACGCACGCGGGCTACGATCTCGACGCGGCCGCGATCCTGTTGTGCGAATCGG
ACGGCACGCAGGAGGAAGTCGCCGAGGAGATCGTGCGGATGACCGCGGTGCTGCGCGAGCACGGCGCGACGCGCATCCAG
GTGTCGCGCAGCGAGGCCGAGCGGCTGCGCTTCTGGTCGGGCCGCAAGAATGCCTTCCCGGCCGCGGGCCGCATTTCGCC
CGACTATTACTGCATGGACGGCACGGTGCCGCGCCGCGCGATCGGGCCGCTCCTCGCGCGCATCGAGCAGATGGAGACGA
AGTACGGGCTGCGCTGCATCAACGTGTTCCACGCGGGCGACGGCAACATGCACCCGCTCATCCTGTTCAACGCGAACGAC
GCCGACGAGCTGCACCGCGCGGAGGCGTTCGGCGCGGAGATCCTCGAAACCTGCGTCGAATTCGGCGGCACGGTGACGGG
CGAGCACGGCGTCGGCGTCGAGAAGCTGAACTCGATGTGCGTGCAGTTCTCGCGCGAGGAGTGCGACGCGTTCTTCGCGG
TCAAGCGCGCGTTCGATCCGCCCGAGCTGCTCAATCCTGACAAGGGGATTCCAACCCGCGCGCGCTGCGCCGAATACGGC
CGGATGCACGTGCGCGGCGGGCTGCTGCCGCGTCCGGACCTGCCGCGCTTCTGA

Upstream 100 bases:

>100_bases
ATGAACCCCGGCAAGATCTTCACGATCGACGCATGAAAGCGACGGCGCCCGCAACGGGATCGAACGACCGCGCGCCGCGC
GCCGCGCAACAGGAGGAGAA

Downstream 100 bases:

>100_bases
CGCCGCCGTGCGGGCCTGAAGGGATCGTAGGGGTTCGGCCCGACTGTGCGATCGCGCCGCCCCGGTAAAATCGCCCGAAA
CGAACAACGAAACACAACGC

Product: glycolate oxidase subunit GlcD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 497

Protein sequence:

>497_residues
MNAPAELSADLRAQRQREVVQALMAVLPTHCLLHRDEDTAAYECDALSAYRRLPLAVALPETESQVQRIVQICRRMDVPI
VPRGAGTSLSGGALPIGHGVVLSLARFTRIVEVDSYARTATVQPGVRNLAISEAAAPYGLYYAPDPSSQIACTIGGNVSE
NSGGVHCLKYGLTCHNVLRVRGVTIDGEIVEFGSLAPDAPGLDLLAVTIGSEGMFIVVTEVTVRLIPKPQCAQLVMASFD
DVVKGGEAVAAIIASGIIPAGLEMMDKPATQAVEAFTHAGYDLDAAAILLCESDGTQEEVAEEIVRMTAVLREHGATRIQ
VSRSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTVPRRAIGPLLARIEQMETKYGLRCINVFHAGDGNMHPLILFNAND
ADELHRAEAFGAEILETCVEFGGTVTGEHGVGVEKLNSMCVQFSREECDAFFAVKRAFDPPELLNPDKGIPTRARCAEYG
RMHVRGGLLPRPDLPRF

Sequences:

>Translated_497_residues
MNAPAELSADLRAQRQREVVQALMAVLPTHCLLHRDEDTAAYECDALSAYRRLPLAVALPETESQVQRIVQICRRMDVPI
VPRGAGTSLSGGALPIGHGVVLSLARFTRIVEVDSYARTATVQPGVRNLAISEAAAPYGLYYAPDPSSQIACTIGGNVSE
NSGGVHCLKYGLTCHNVLRVRGVTIDGEIVEFGSLAPDAPGLDLLAVTIGSEGMFIVVTEVTVRLIPKPQCAQLVMASFD
DVVKGGEAVAAIIASGIIPAGLEMMDKPATQAVEAFTHAGYDLDAAAILLCESDGTQEEVAEEIVRMTAVLREHGATRIQ
VSRSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTVPRRAIGPLLARIEQMETKYGLRCINVFHAGDGNMHPLILFNAND
ADELHRAEAFGAEILETCVEFGGTVTGEHGVGVEKLNSMCVQFSREECDAFFAVKRAFDPPELLNPDKGIPTRARCAEYG
RMHVRGGLLPRPDLPRF
>Mature_497_residues
MNAPAELSADLRAQRQREVVQALMAVLPTHCLLHRDEDTAAYECDALSAYRRLPLAVALPETESQVQRIVQICRRMDVPI
VPRGAGTSLSGGALPIGHGVVLSLARFTRIVEVDSYARTATVQPGVRNLAISEAAAPYGLYYAPDPSSQIACTIGGNVSE
NSGGVHCLKYGLTCHNVLRVRGVTIDGEIVEFGSLAPDAPGLDLLAVTIGSEGMFIVVTEVTVRLIPKPQCAQLVMASFD
DVVKGGEAVAAIIASGIIPAGLEMMDKPATQAVEAFTHAGYDLDAAAILLCESDGTQEEVAEEIVRMTAVLREHGATRIQ
VSRSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTVPRRAIGPLLARIEQMETKYGLRCINVFHAGDGNMHPLILFNAND
ADELHRAEAFGAEILETCVEFGGTVTGEHGVGVEKLNSMCVQFSREECDAFFAVKRAFDPPELLNPDKGIPTRARCAEYG
RMHVRGGLLPRPDLPRF

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI37595756, Length=421, Percent_Identity=28.7410926365796, Blast_Score=192, Evalue=5e-49,
Organism=Homo sapiens, GI37595754, Length=445, Percent_Identity=27.8651685393258, Blast_Score=185, Evalue=7e-47,
Organism=Homo sapiens, GI119964728, Length=445, Percent_Identity=24.4943820224719, Blast_Score=122, Evalue=9e-28,
Organism=Homo sapiens, GI4501993, Length=235, Percent_Identity=28.0851063829787, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI1789351, Length=479, Percent_Identity=59.9164926931106, Blast_Score=590, Evalue=1e-170,
Organism=Escherichia coli, GI1787977, Length=515, Percent_Identity=23.8834951456311, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI48994907, Length=451, Percent_Identity=22.8381374722838, Blast_Score=78, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71992373, Length=425, Percent_Identity=25.4117647058824, Blast_Score=164, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI71992381, Length=425, Percent_Identity=24.2352941176471, Blast_Score=146, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI71992392, Length=358, Percent_Identity=25.1396648044693, Blast_Score=137, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17534361, Length=446, Percent_Identity=24.8878923766816, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17556096, Length=291, Percent_Identity=23.3676975945017, Blast_Score=77, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320027, Length=432, Percent_Identity=26.1574074074074, Blast_Score=156, Evalue=6e-39,
Organism=Saccharomyces cerevisiae, GI6320023, Length=460, Percent_Identity=28.0434782608696, Blast_Score=147, Evalue=4e-36,
Organism=Saccharomyces cerevisiae, GI6320764, Length=463, Percent_Identity=25.9179265658747, Blast_Score=138, Evalue=2e-33,
Organism=Drosophila melanogaster, GI18921117, Length=444, Percent_Identity=27.027027027027, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24639277, Length=444, Percent_Identity=27.027027027027, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24639275, Length=444, Percent_Identity=27.027027027027, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24653753, Length=222, Percent_Identity=26.5765765765766, Blast_Score=75, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 53608; Mature: 53608

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPAELSADLRAQRQREVVQALMAVLPTHCLLHRDEDTAAYECDALSAYRRLPLAVALP
CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEHHHHHHHHHCCEEEECC
ETESQVQRIVQICRRMDVPIVPRGAGTSLSGGALPIGHGVVLSLARFTRIVEVDSYARTA
CCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
TVQPGVRNLAISEAAAPYGLYYAPDPSSQIACTIGGNVSENSGGVHCLKYGLTCHNVLRV
ECCCCHHHHHHHHCCCCCCEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHHEE
RGVTIDGEIVEFGSLAPDAPGLDLLAVTIGSEGMFIVVTEVTVRLIPKPQCAQLVMASFD
EEEEECCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEEECCCCHHHHHHHHHHH
DVVKGGEAVAAIIASGIIPAGLEMMDKPATQAVEAFTHAGYDLDAAAILLCESDGTQEEV
HHHCCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHH
AEEIVRMTAVLREHGATRIQVSRSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTVPRRA
HHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHH
IGPLLARIEQMETKYGLRCINVFHAGDGNMHPLILFNANDADELHRAEAFGAEILETCVE
HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
FGGTVTGEHGVGVEKLNSMCVQFSREECDAFFAVKRAFDPPELLNPDKGIPTRARCAEYG
HCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHC
RMHVRGGLLPRPDLPRF
CEEECCCCCCCCCCCCC
>Mature Secondary Structure
MNAPAELSADLRAQRQREVVQALMAVLPTHCLLHRDEDTAAYECDALSAYRRLPLAVALP
CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEHHHHHHHHHCCEEEECC
ETESQVQRIVQICRRMDVPIVPRGAGTSLSGGALPIGHGVVLSLARFTRIVEVDSYARTA
CCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
TVQPGVRNLAISEAAAPYGLYYAPDPSSQIACTIGGNVSENSGGVHCLKYGLTCHNVLRV
ECCCCHHHHHHHHCCCCCCEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHHEE
RGVTIDGEIVEFGSLAPDAPGLDLLAVTIGSEGMFIVVTEVTVRLIPKPQCAQLVMASFD
EEEEECCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEEECCCCHHHHHHHHHHH
DVVKGGEAVAAIIASGIIPAGLEMMDKPATQAVEAFTHAGYDLDAAAILLCESDGTQEEV
HHHCCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHH
AEEIVRMTAVLREHGATRIQVSRSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTVPRRA
HHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHH
IGPLLARIEQMETKYGLRCINVFHAGDGNMHPLILFNANDADELHRAEAFGAEILETCVE
HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
FGGTVTGEHGVGVEKLNSMCVQFSREECDAFFAVKRAFDPPELLNPDKGIPTRARCAEYG
HCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHC
RMHVRGGLLPRPDLPRF
CEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]