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The map label for this gene is glcD [H]

Identifier: 83719815

GI number: 83719815

Start: 1444529

End: 1445938

Strand: Reverse

Name: glcD [H]

Synonym: BTH_I1292

Alternate gene names: 83719815

Gene position: 1445938-1444529 (Counterclockwise)

Preceding gene: 83718583

Following gene: 83718880

Centisome position: 37.96

GC content: 71.21

Gene sequence:

>1410_bases
TTGAACCACCCCGCTCCGCCGCCGCATCGCCCGCTTCCCACCGCCTTCGTCGACGCGCTCGCCGCCCGGTTCGGCGCGCG
CATGTCGGTCGCGCAGGCGGTGCGCGCCCATCACGGCCGCGACGAGTCGCCGTTCGATCCGCAACTGCCCGACGCCGTCG
TGTTCGCGCACACGGCCGACGACGTGCGCGACGTCGTCCTTCTCTGCGCGCGGCACGACGTGCCGCTGATCCCGTACGGC
GTCGGCTCGTCGCTCGAAGGCCATCTGCTCGCGGTGCGCGGCGGCGTGTCGCTCGATCTGTCGGAGATGAACCGCGTGCT
GTCGATCGACGCCGACGATCTCACCGCGACCGTCGAGCCCGGGCTCACGCGCCGCGCGCTGAACGACGCGCTGCGCGACA
CGGGCCTCTTCTTCCCGATCGATCCGGGCGCGGACGCGAGCATCGGCGGGATGACCGCGACGCGCGCGTCGGGCACGAAC
GCGGTGCGCTACGGCACGATGCGCGAGAACGTGCTCGGCCTCACCGCCGTGCTCGCCGACGGCCGGGTCGTGAAGACGGG
CACGCGCGCGCGCAAATCGTCGGCGGGCTACGATCTCACGCGGCTTTTCGTCGGCTCCGAAGGCACGCTCGGCGTGATCA
CCGAGATCACGCTGCGCCTGCACCCGCTGCCCGAGGCCGTGTCGGCCGCCGTGTGCGCCTTCCCGTCGATGAGCGCCGCC
GCGCGCACCGTGATCGAGACGATTCAGATCGGCGTGCCGATCGCGCGCGTCGAATTCGTCGACGCGCTCGCGGTGCGCGC
GATCAACCGCAACGCGCAGCTCGGGCTCGCCGAGGCGCCGACGCTCTTCTTCGAATTCCACGGCACCGAATCCGGCGTGC
GCGAGCAGGCTCAGCAAGTCGAGGCGCTCGCCGAGCAGAACGGCGGCCAGGGCTTCGAATGGGCGACGCGGCCCGAGGAT
CGCACGCGCCTCTGGTCCGCGCGCCACCACGCGTATTTCTCGATGCTGCAACTGAAGCCCGGCTGCCGCGCGGTGACGAC
CGACGTCTGCGTGCCGATCTCGCAGCTCGCCGCGTGCGTCGAGGAAACCGAAGCCGACCTGAACGCGTCGTCGCTGCCGT
GCCCGATCGTGGGCCACGTCGGCGACGGCAACTTCCACGTCGCGATCCTCGTCGATCCGGCCAAGCCCGAGGAGCTCGCC
GAAGCCGAGGCGCTCAACGACCGGATCGTCGAGCGCGCGCTGCGCATGGGCGGCACCTGCACGGGCGAGCACGGCGTCGG
GCTGCACAAGATGCGCTTTCTCGCGGCCGAGCACGGCGAGAACGCGGTCGACGCGATGCGCGCGATCAAGCGCGCGCTCG
ATCCGCGCAACCTGATGAACCCCGGCAAGATCTTCACGATCGACGCATGA

Upstream 100 bases:

>100_bases
GCAGCCGCGTTCGAGGCGGCGCGCATCCATTCGAGCGTAGAATGATCCGGCCCGCCTCGCCGCGGCGCGCGCCATAAAGA
TCTGCCCCCAGGAGACTCGC

Downstream 100 bases:

>100_bases
AAGCGACGGCGCCCGCAACGGGATCGAACGACCGCGCGCCGCGCGCCGCGCAACAGGAGGAGAAATGAACGCCCCCGCCG
AACTGTCGGCCGATCTGCGC

Product: glycolate oxidase subunit GlcD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MNHPAPPPHRPLPTAFVDALAARFGARMSVAQAVRAHHGRDESPFDPQLPDAVVFAHTADDVRDVVLLCARHDVPLIPYG
VGSSLEGHLLAVRGGVSLDLSEMNRVLSIDADDLTATVEPGLTRRALNDALRDTGLFFPIDPGADASIGGMTATRASGTN
AVRYGTMRENVLGLTAVLADGRVVKTGTRARKSSAGYDLTRLFVGSEGTLGVITEITLRLHPLPEAVSAAVCAFPSMSAA
ARTVIETIQIGVPIARVEFVDALAVRAINRNAQLGLAEAPTLFFEFHGTESGVREQAQQVEALAEQNGGQGFEWATRPED
RTRLWSARHHAYFSMLQLKPGCRAVTTDVCVPISQLAACVEETEADLNASSLPCPIVGHVGDGNFHVAILVDPAKPEELA
EAEALNDRIVERALRMGGTCTGEHGVGLHKMRFLAAEHGENAVDAMRAIKRALDPRNLMNPGKIFTIDA

Sequences:

>Translated_469_residues
MNHPAPPPHRPLPTAFVDALAARFGARMSVAQAVRAHHGRDESPFDPQLPDAVVFAHTADDVRDVVLLCARHDVPLIPYG
VGSSLEGHLLAVRGGVSLDLSEMNRVLSIDADDLTATVEPGLTRRALNDALRDTGLFFPIDPGADASIGGMTATRASGTN
AVRYGTMRENVLGLTAVLADGRVVKTGTRARKSSAGYDLTRLFVGSEGTLGVITEITLRLHPLPEAVSAAVCAFPSMSAA
ARTVIETIQIGVPIARVEFVDALAVRAINRNAQLGLAEAPTLFFEFHGTESGVREQAQQVEALAEQNGGQGFEWATRPED
RTRLWSARHHAYFSMLQLKPGCRAVTTDVCVPISQLAACVEETEADLNASSLPCPIVGHVGDGNFHVAILVDPAKPEELA
EAEALNDRIVERALRMGGTCTGEHGVGLHKMRFLAAEHGENAVDAMRAIKRALDPRNLMNPGKIFTIDA
>Mature_469_residues
MNHPAPPPHRPLPTAFVDALAARFGARMSVAQAVRAHHGRDESPFDPQLPDAVVFAHTADDVRDVVLLCARHDVPLIPYG
VGSSLEGHLLAVRGGVSLDLSEMNRVLSIDADDLTATVEPGLTRRALNDALRDTGLFFPIDPGADASIGGMTATRASGTN
AVRYGTMRENVLGLTAVLADGRVVKTGTRARKSSAGYDLTRLFVGSEGTLGVITEITLRLHPLPEAVSAAVCAFPSMSAA
ARTVIETIQIGVPIARVEFVDALAVRAINRNAQLGLAEAPTLFFEFHGTESGVREQAQQVEALAEQNGGQGFEWATRPED
RTRLWSARHHAYFSMLQLKPGCRAVTTDVCVPISQLAACVEETEADLNASSLPCPIVGHVGDGNFHVAILVDPAKPEELA
EAEALNDRIVERALRMGGTCTGEHGVGLHKMRFLAAEHGENAVDAMRAIKRALDPRNLMNPGKIFTIDA

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI37595756, Length=454, Percent_Identity=53.0837004405286, Blast_Score=494, Evalue=1e-140,
Organism=Homo sapiens, GI37595754, Length=477, Percent_Identity=50.5241090146751, Blast_Score=484, Evalue=1e-137,
Organism=Homo sapiens, GI119964728, Length=422, Percent_Identity=29.6208530805687, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI4501993, Length=464, Percent_Identity=26.7241379310345, Blast_Score=126, Evalue=5e-29,
Organism=Escherichia coli, GI1789351, Length=419, Percent_Identity=31.980906921241, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1787977, Length=499, Percent_Identity=27.4549098196393, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI48994907, Length=454, Percent_Identity=27.7533039647577, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI48994914, Length=176, Percent_Identity=32.3863636363636, Blast_Score=82, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI71992373, Length=438, Percent_Identity=46.8036529680365, Blast_Score=421, Evalue=1e-118,
Organism=Caenorhabditis elegans, GI71992381, Length=438, Percent_Identity=45.662100456621, Blast_Score=402, Evalue=1e-112,
Organism=Caenorhabditis elegans, GI71992392, Length=380, Percent_Identity=48.9473684210526, Blast_Score=385, Evalue=1e-107,
Organism=Caenorhabditis elegans, GI17534361, Length=425, Percent_Identity=25.4117647058824, Blast_Score=130, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17556096, Length=473, Percent_Identity=25.5813953488372, Blast_Score=115, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6320027, Length=436, Percent_Identity=43.5779816513761, Blast_Score=347, Evalue=2e-96,
Organism=Saccharomyces cerevisiae, GI6320023, Length=470, Percent_Identity=24.8936170212766, Blast_Score=152, Evalue=1e-37,
Organism=Saccharomyces cerevisiae, GI6320764, Length=438, Percent_Identity=25.3424657534247, Blast_Score=147, Evalue=3e-36,
Organism=Drosophila melanogaster, GI18921117, Length=418, Percent_Identity=27.0334928229665, Blast_Score=156, Evalue=4e-38,
Organism=Drosophila melanogaster, GI24639277, Length=418, Percent_Identity=27.0334928229665, Blast_Score=156, Evalue=4e-38,
Organism=Drosophila melanogaster, GI24639275, Length=418, Percent_Identity=27.0334928229665, Blast_Score=156, Evalue=4e-38,
Organism=Drosophila melanogaster, GI24653753, Length=464, Percent_Identity=27.801724137931, Blast_Score=133, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50074; Mature: 50074

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHPAPPPHRPLPTAFVDALAARFGARMSVAQAVRAHHGRDESPFDPQLPDAVVFAHTAD
CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHH
DVRDVVLLCARHDVPLIPYGVGSSLEGHLLAVRGGVSLDLSEMNRVLSIDADDLTATVEP
HHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCEEEHHHCCCEEEECCCCCEEECCC
GLTRRALNDALRDTGLFFPIDPGADASIGGMTATRASGTNAVRYGTMRENVLGLTAVLAD
CHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHHHHCC
GRVVKTGTRARKSSAGYDLTRLFVGSEGTLGVITEITLRLHPLPEAVSAAVCAFPSMSAA
CEEEECCCHHHHCCCCCCEEEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHHCCCHHHH
ARTVIETIQIGVPIARVEFVDALAVRAINRNAQLGLAEAPTLFFEFHGTESGVREQAQQV
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
EALAEQNGGQGFEWATRPEDRTRLWSARHHAYFSMLQLKPGCRAVTTDVCVPISQLAACV
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHHHHHHH
EETEADLNASSLPCPIVGHVGDGNFHVAILVDPAKPEELAEAEALNDRIVERALRMGGTC
HHHHCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
TGEHGVGLHKMRFLAAEHGENAVDAMRAIKRALDPRNLMNPGKIFTIDA
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MNHPAPPPHRPLPTAFVDALAARFGARMSVAQAVRAHHGRDESPFDPQLPDAVVFAHTAD
CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHH
DVRDVVLLCARHDVPLIPYGVGSSLEGHLLAVRGGVSLDLSEMNRVLSIDADDLTATVEP
HHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCEEEHHHCCCEEEECCCCCEEECCC
GLTRRALNDALRDTGLFFPIDPGADASIGGMTATRASGTNAVRYGTMRENVLGLTAVLAD
CHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHHHHCC
GRVVKTGTRARKSSAGYDLTRLFVGSEGTLGVITEITLRLHPLPEAVSAAVCAFPSMSAA
CEEEECCCHHHHCCCCCCEEEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHHCCCHHHH
ARTVIETIQIGVPIARVEFVDALAVRAINRNAQLGLAEAPTLFFEFHGTESGVREQAQQV
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
EALAEQNGGQGFEWATRPEDRTRLWSARHHAYFSMLQLKPGCRAVTTDVCVPISQLAACV
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHHHHHHH
EETEADLNASSLPCPIVGHVGDGNFHVAILVDPAKPEELAEAEALNDRIVERALRMGGTC
HHHHCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
TGEHGVGLHKMRFLAAEHGENAVDAMRAIKRALDPRNLMNPGKIFTIDA
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]