Click here to switch to the map view.

The map label for this gene is yhcK [H]

Identifier: 83590315

GI number: 83590315

Start: 1520473

End: 1521792

Strand: Reverse

Name: yhcK [H]

Synonym: Moth_1471

Alternate gene names: 83590315

Gene position: 1521792-1520473 (Counterclockwise)

Preceding gene: 83590316

Following gene: 83590314

Centisome position: 57.89

GC content: 51.21

Gene sequence:

>1320_bases
ATGGAAATACAATGGCAGGAAACTTACTTCAAACTATTACACCAGTACAGTCTACAGCAGAGTGAGGCCATCCTTTATGA
AGCCTCCAAGCTTAGCAAGGCCCTGGTGGAGAAGGGTGTAGGCCCCGAAGATATTGTTCAATTTCACCTTGAGGCCCTGG
AAAAGCTTTTCAAGGATATTTCGCCCCTCCGGGTACCGGGTCTGATTCTTATTTCCTTTGATCTACTGCTGGAAGTGATG
ATGGCTTATGCTTTGAATTTCAGGGAATATTTGGAAGTAAAAAACAAGCTCATTGAGCGACTGGAAAACTTTAATCAAGA
ATTGGCGGCTGCCAACCGTGCCCTGGAAATGAAAGTCAAAGAGTTATCTGTTATCCAGGAACTGACGAAAGAATTGGGAT
CCTGCCTGGACCTTGATCGGACGGCCGGGATAATCACCAGGCACCTGCAGGAATTGCTTAATTGCGAAGTCAATCTATAT
ATTATCAGTAGTAACGGTGAATGGCAGGGCTATACCCCCGATGATGACCCTGAGGCCGTCAGTATAAGCAAAAATATTGA
TGTCCCGCCCCCGGTCCTGGAAGCCAGGGGCGGGGAGGCCGTCAGGGTGGAAGGTCGGGACTTGACATTGCCCCTGGTAG
TTGATCGGGAGGTTGGCGGCGCAATCTATTTACAAAGGGACGATAGCTTCAGCGCCGACGAGTTTCGGCTGGCGGATATT
ATCGCCGGCTATGCTGCCCTGGCCATCGAGCGCGCCCGGCTGTATGAAGCCATGAAGTTCCAGGCAACCATTGACGCCAA
AACCGGTTTGTATAATTACCAGCACATGATGCACCTGCTGGAAAAGGAGATTGCCCGTGCCAGGCGTTACCAGCGTACCT
TTACCATCGCCATGCTTGATATCGATGACTTTAAAATTTACAACGATACCCATGGTCACCACCAGGGAGACAAGGCCCTG
CAGAAAATAGCGGCCCTCATCAAGGCCAACATCCGGGAAGTAGATATAGCAGCGCGCTATGGTGGCGAGGAATTTGTCAT
TATCATGCCGGAAACATCTGCTTTAGAAGCGAGTGTAGTGGCCGAAAGGGTACGGCGAGCCATCATGAATGCTGGTATCG
CCAACGTAGGATGCGGTCCGGACAGGCTGCTGACGGTAAGCATCGGCCTTGGTACTTATCCCCACGATGCCACGACGGCC
GGGAAATTGATTGACGCCGCCGATAGCGCCCTTTACGAAGCCAAGCGGTGGGGAAAGAACGTAGTGCGGGTTTACAGTAA
GACTGACAGGCGGCGATCCGGCGATGCAGAAGTACTTTAA

Upstream 100 bases:

>100_bases
TACTGCAGAGGAACTGGTCCGGTTGATAGGGGAAAAGTATGGCCGCCGGGATGATGACGTTGCCGTTATAGTTGCCAGGT
AAATAGGGGGCGATCCTGGT

Downstream 100 bases:

>100_bases
TTCCCGGCTCCTGGCGATTATTATAGCTTTGTTCATTATCGGCGTTATCGGCCAGACCTTCTGGCTGTATGTACATATGA
TTGAATTAGCAGGCGAGTAT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MEIQWQETYFKLLHQYSLQQSEAILYEASKLSKALVEKGVGPEDIVQFHLEALEKLFKDISPLRVPGLILISFDLLLEVM
MAYALNFREYLEVKNKLIERLENFNQELAAANRALEMKVKELSVIQELTKELGSCLDLDRTAGIITRHLQELLNCEVNLY
IISSNGEWQGYTPDDDPEAVSISKNIDVPPPVLEARGGEAVRVEGRDLTLPLVVDREVGGAIYLQRDDSFSADEFRLADI
IAGYAALAIERARLYEAMKFQATIDAKTGLYNYQHMMHLLEKEIARARRYQRTFTIAMLDIDDFKIYNDTHGHHQGDKAL
QKIAALIKANIREVDIAARYGGEEFVIIMPETSALEASVVAERVRRAIMNAGIANVGCGPDRLLTVSIGLGTYPHDATTA
GKLIDAADSALYEAKRWGKNVVRVYSKTDRRRSGDAEVL

Sequences:

>Translated_439_residues
MEIQWQETYFKLLHQYSLQQSEAILYEASKLSKALVEKGVGPEDIVQFHLEALEKLFKDISPLRVPGLILISFDLLLEVM
MAYALNFREYLEVKNKLIERLENFNQELAAANRALEMKVKELSVIQELTKELGSCLDLDRTAGIITRHLQELLNCEVNLY
IISSNGEWQGYTPDDDPEAVSISKNIDVPPPVLEARGGEAVRVEGRDLTLPLVVDREVGGAIYLQRDDSFSADEFRLADI
IAGYAALAIERARLYEAMKFQATIDAKTGLYNYQHMMHLLEKEIARARRYQRTFTIAMLDIDDFKIYNDTHGHHQGDKAL
QKIAALIKANIREVDIAARYGGEEFVIIMPETSALEASVVAERVRRAIMNAGIANVGCGPDRLLTVSIGLGTYPHDATTA
GKLIDAADSALYEAKRWGKNVVRVYSKTDRRRSGDAEVL
>Mature_439_residues
MEIQWQETYFKLLHQYSLQQSEAILYEASKLSKALVEKGVGPEDIVQFHLEALEKLFKDISPLRVPGLILISFDLLLEVM
MAYALNFREYLEVKNKLIERLENFNQELAAANRALEMKVKELSVIQELTKELGSCLDLDRTAGIITRHLQELLNCEVNLY
IISSNGEWQGYTPDDDPEAVSISKNIDVPPPVLEARGGEAVRVEGRDLTLPLVVDREVGGAIYLQRDDSFSADEFRLADI
IAGYAALAIERARLYEAMKFQATIDAKTGLYNYQHMMHLLEKEIARARRYQRTFTIAMLDIDDFKIYNDTHGHHQGDKAL
QKIAALIKANIREVDIAARYGGEEFVIIMPETSALEASVVAERVRRAIMNAGIANVGCGPDRLLTVSIGLGTYPHDATTA
GKLIDAADSALYEAKRWGKNVVRVYSKTDRRRSGDAEVL

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=34.1040462427746, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1786584, Length=163, Percent_Identity=33.1288343558282, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1787262, Length=192, Percent_Identity=29.1666666666667, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI87081881, Length=173, Percent_Identity=33.5260115606936, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=33.1395348837209, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=32.7160493827161, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787802, Length=232, Percent_Identity=28.0172413793103, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787541, Length=180, Percent_Identity=28.3333333333333, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1788381, Length=176, Percent_Identity=26.7045454545455, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=114, Percent_Identity=35.0877192982456, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787816, Length=126, Percent_Identity=34.1269841269841, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081977, Length=184, Percent_Identity=26.6304347826087, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 49364; Mature: 49364

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIQWQETYFKLLHQYSLQQSEAILYEASKLSKALVEKGVGPEDIVQFHLEALEKLFKDI
CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
SPLRVPGLILISFDLLLEVMMAYALNFREYLEVKNKLIERLENFNQELAAANRALEMKVK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELSVIQELTKELGSCLDLDRTAGIITRHLQELLNCEVNLYIISSNGEWQGYTPDDDPEAV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCEE
SISKNIDVPPPVLEARGGEAVRVEGRDLTLPLVVDREVGGAIYLQRDDSFSADEFRLADI
EEECCCCCCCCHHHCCCCCEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHH
IAGYAALAIERARLYEAMKFQATIDAKTGLYNYQHMMHLLEKEIARARRYQRTFTIAMLD
HHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
IDDFKIYNDTHGHHQGDKALQKIAALIKANIREVDIAARYGGEEFVIIMPETSALEASVV
CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCHHEEEHEECCCCEEEEEECCCHHHHHHHH
AERVRRAIMNAGIANVGCGPDRLLTVSIGLGTYPHDATTAGKLIDAADSALYEAKRWGKN
HHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VVRVYSKTDRRRSGDAEVL
HHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MEIQWQETYFKLLHQYSLQQSEAILYEASKLSKALVEKGVGPEDIVQFHLEALEKLFKDI
CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
SPLRVPGLILISFDLLLEVMMAYALNFREYLEVKNKLIERLENFNQELAAANRALEMKVK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELSVIQELTKELGSCLDLDRTAGIITRHLQELLNCEVNLYIISSNGEWQGYTPDDDPEAV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCEE
SISKNIDVPPPVLEARGGEAVRVEGRDLTLPLVVDREVGGAIYLQRDDSFSADEFRLADI
EEECCCCCCCCHHHCCCCCEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHH
IAGYAALAIERARLYEAMKFQATIDAKTGLYNYQHMMHLLEKEIARARRYQRTFTIAMLD
HHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
IDDFKIYNDTHGHHQGDKALQKIAALIKANIREVDIAARYGGEEFVIIMPETSALEASVV
CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCHHEEEHEECCCCEEEEEECCCHHHHHHHH
AERVRRAIMNAGIANVGCGPDRLLTVSIGLGTYPHDATTAGKLIDAADSALYEAKRWGKN
HHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VVRVYSKTDRRRSGDAEVL
HHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]