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The map label for this gene is nifU [H]

Identifier: 83590263

GI number: 83590263

Start: 1460317

End: 1460736

Strand: Reverse

Name: nifU [H]

Synonym: Moth_1416

Alternate gene names: 83590263

Gene position: 1460736-1460317 (Counterclockwise)

Preceding gene: 83590264

Following gene: 83590262

Centisome position: 55.57

GC content: 54.52

Gene sequence:

>420_bases
ATGTATGGCGACCTCGTTATAGATCATTTTCTTAATCCACGTAATGTGGGGCGTATAGAAGATGCCGATGGCATAGGTGC
TATAGGCGATCCCGGGTGTGGCGATTACCTGTGCATCTATATCAAGGTCCGGGATAACCGCCTGGTCGATGTTAAGTTTC
AGGTGCATGGTTGCCCGGCAGCCATAGCCACCAGCAGCATCCTTACGGAGATGGCCCGCGGAAAAACTTTAGAGGAGGGC
TTGCGCATTACCGACGCTGATGTAGCGGCAGCCATCGGCGGTTTGCCGGAAGTTAAACTGCACTGCTCCAACCTGGGCGC
CAGCGCCCTCCATGATGCAATCCGTAACTACCAGGCAAAAATGCAGGCGGGAGGGCAGCAAAATGGTCGCCGGGGTAGCC
CTGGATCCGGAAAAGTTTAA

Upstream 100 bases:

>100_bases
GAAGAATTAAGTCCATGTTGTTATTGACGTATGGCCAAAACAGGTCTATAATGGCAATAGATTTAGTAATCCTAAACCAT
CTTCCTGGGGGTAAAAGTCA

Downstream 100 bases:

>100_bases
AAAGAGCGAGCGGCGTTTAACCCCCCAGCGCCAGGCGGTGCTTAAGGCCTTTCTGGAATTATCCCGGGAACACCCTACGG
CCGAATCTATTTATCATGTA

Product: nitrogen-fixing NifU-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MYGDLVIDHFLNPRNVGRIEDADGIGAIGDPGCGDYLCIYIKVRDNRLVDVKFQVHGCPAAIATSSILTEMARGKTLEEG
LRITDADVAAAIGGLPEVKLHCSNLGASALHDAIRNYQAKMQAGGQQNGRRGSPGSGKV

Sequences:

>Translated_139_residues
MYGDLVIDHFLNPRNVGRIEDADGIGAIGDPGCGDYLCIYIKVRDNRLVDVKFQVHGCPAAIATSSILTEMARGKTLEEG
LRITDADVAAAIGGLPEVKLHCSNLGASALHDAIRNYQAKMQAGGQQNGRRGSPGSGKV
>Mature_139_residues
MYGDLVIDHFLNPRNVGRIEDADGIGAIGDPGCGDYLCIYIKVRDNRLVDVKFQVHGCPAAIATSSILTEMARGKTLEEG
LRITDADVAAAIGGLPEVKLHCSNLGASALHDAIRNYQAKMQAGGQQNGRRGSPGSGKV

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=126, Percent_Identity=42.0634920634921, Blast_Score=107, Evalue=4e-24,
Organism=Homo sapiens, GI24307953, Length=121, Percent_Identity=42.9752066115703, Blast_Score=105, Evalue=2e-23,
Organism=Escherichia coli, GI1788878, Length=126, Percent_Identity=43.6507936507937, Blast_Score=109, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI17543474, Length=123, Percent_Identity=43.0894308943089, Blast_Score=105, Evalue=7e-24,
Organism=Saccharomyces cerevisiae, GI6324800, Length=125, Percent_Identity=42.4, Blast_Score=105, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6325122, Length=125, Percent_Identity=41.6, Blast_Score=102, Evalue=3e-23,
Organism=Drosophila melanogaster, GI21355597, Length=126, Percent_Identity=42.0634920634921, Blast_Score=108, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 14676; Mature: 14676

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYGDLVIDHFLNPRNVGRIEDADGIGAIGDPGCGDYLCIYIKVRDNRLVDVKFQVHGCPA
CCCCEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEECCCCH
AIATSSILTEMARGKTLEEGLRITDADVAAAIGGLPEVKLHCSNLGASALHDAIRNYQAK
HHHHHHHHHHHHCCCCHHHCCEECCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHH
MQAGGQQNGRRGSPGSGKV
HHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYGDLVIDHFLNPRNVGRIEDADGIGAIGDPGCGDYLCIYIKVRDNRLVDVKFQVHGCPA
CCCCEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEECCCCH
AIATSSILTEMARGKTLEEGLRITDADVAAAIGGLPEVKLHCSNLGASALHDAIRNYQAK
HHHHHHHHHHHHCCCCHHHCCEECCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHH
MQAGGQQNGRRGSPGSGKV
HHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]