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The map label for this gene is yqxC [H]

Identifier: 83593952

GI number: 83593952

Start: 3048958

End: 3049752

Strand: Direct

Name: yqxC [H]

Synonym: Rru_A2620

Alternate gene names: 83593952

Gene position: 3048958-3049752 (Clockwise)

Preceding gene: 83593951

Following gene: 83593954

Centisome position: 70.05

GC content: 69.31

Gene sequence:

>795_bases
GTGAACGACGACACGGCGGCCGATGACCGGCGCCCCCCGGGCGACAAGCGCCCGGGCAAGCTGCGCCTTGACCAGCTTCT
GGTCGATCGCGGGCTGGTCGAAAGCCGGGCCAAGGCCCAGGCGGTGATTCTGGCCGGGCTGGTGTTTTCGGGCGAGCGGC
GGCTGGAAAAGGCCGGCGCCCCGGTGGCCGCCGATCTGGCCATCGATGTCCGGGGCCAGCCCCATCCCTGGGTGTCACGC
GGCGGTATGAAGCTTGATAAGGGGTTGGACAGCTTCGGCTTTTCCGCCGAAGGCCTGACCTGCCTCGATGTCGGCGCCTC
GACCGGCGGTTTTACCGATGTTCTGCTGACCCGGGGAGCGGCCAAGGTCTATGCCGTCGATGTCGGCTATGGCCAGCTGG
CCCACAAGCTGCGCACCGATGAGCGGGTTATCGTTCTGGAACGCACCAACGCCCGCCACCTTGACGCCACGCTGATCCCC
GAGCCGGTGGGCGCCGTGGTCTGCGACGCCAGCTTCATCGGCCTGCGCACCGTTTTGCCCGCCGCCCTGGGCCGGGCGGC
GCCGGGGGCCTTTCTGGTCGCCCTGATCAAACCGCAGTTCGAGGTCGGCCGCGAGCGCGTCGGCAAGGGCGGCGTCGTCC
GCGATCCCGCCCTTCACGCCGAAGTCTGCACCACCATCACCGACTGGCTGGCCGCCCTGCCCGGCTGGAGCGTCGTCGGC
CTGACCGAAAGCCCGATCAAGGGCCCGGAAGGCAACATCGAATTCCTCATCGGCGGCCGCTTCTCCGGGGTGTGA

Upstream 100 bases:

>100_bases
CCGGCATCGACGCCCAGGCCATCACCACCGCCGTCCTCGACGCCCTCAAGCTTGAAACCAGCGCCACCATCGACGCCGGC
GCCCTGAAGGCGTGACAGGC

Downstream 100 bases:

>100_bases
GCAAACCGGCCGCCCTTCGGCATGCCAACGGCCCGGCCGGGATTGTCCCGCCGGGCCGTTTCTTATGATCAGCGCCCGAT
CACCGGCATGGCCAGAGGTC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MNDDTAADDRRPPGDKRPGKLRLDQLLVDRGLVESRAKAQAVILAGLVFSGERRLEKAGAPVAADLAIDVRGQPHPWVSR
GGMKLDKGLDSFGFSAEGLTCLDVGASTGGFTDVLLTRGAAKVYAVDVGYGQLAHKLRTDERVIVLERTNARHLDATLIP
EPVGAVVCDASFIGLRTVLPAALGRAAPGAFLVALIKPQFEVGRERVGKGGVVRDPALHAEVCTTITDWLAALPGWSVVG
LTESPIKGPEGNIEFLIGGRFSGV

Sequences:

>Translated_264_residues
MNDDTAADDRRPPGDKRPGKLRLDQLLVDRGLVESRAKAQAVILAGLVFSGERRLEKAGAPVAADLAIDVRGQPHPWVSR
GGMKLDKGLDSFGFSAEGLTCLDVGASTGGFTDVLLTRGAAKVYAVDVGYGQLAHKLRTDERVIVLERTNARHLDATLIP
EPVGAVVCDASFIGLRTVLPAALGRAAPGAFLVALIKPQFEVGRERVGKGGVVRDPALHAEVCTTITDWLAALPGWSVVG
LTESPIKGPEGNIEFLIGGRFSGV
>Mature_264_residues
MNDDTAADDRRPPGDKRPGKLRLDQLLVDRGLVESRAKAQAVILAGLVFSGERRLEKAGAPVAADLAIDVRGQPHPWVSR
GGMKLDKGLDSFGFSAEGLTCLDVGASTGGFTDVLLTRGAAKVYAVDVGYGQLAHKLRTDERVIVLERTNARHLDATLIP
EPVGAVVCDASFIGLRTVLPAALGRAAPGAFLVALIKPQFEVGRERVGKGGVVRDPALHAEVCTTITDWLAALPGWSVVG
LTESPIKGPEGNIEFLIGGRFSGV

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27817; Mature: 27817

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDDTAADDRRPPGDKRPGKLRLDQLLVDRGLVESRAKAQAVILAGLVFSGERRLEKAGA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCHHHHHHCCC
PVAADLAIDVRGQPHPWVSRGGMKLDKGLDSFGFSAEGLTCLDVGASTGGFTDVLLTRGA
CEEEEEEEECCCCCCCCHHCCCEEHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCC
AKVYAVDVGYGQLAHKLRTDERVIVLERTNARHLDATLIPEPVGAVVCDASFIGLRTVLP
CEEEEEECCHHHHHHHHCCCCEEEEEECCCCCCCCEECCCCCCCCEEECCHHHHHHHHHH
AALGRAAPGAFLVALIKPQFEVGRERVGKGGVVRDPALHAEVCTTITDWLAALPGWSVVG
HHHCCCCCCCEEEEEECCCHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCCCEEEE
LTESPIKGPEGNIEFLIGGRFSGV
CCCCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MNDDTAADDRRPPGDKRPGKLRLDQLLVDRGLVESRAKAQAVILAGLVFSGERRLEKAGA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCHHHHHHCCC
PVAADLAIDVRGQPHPWVSRGGMKLDKGLDSFGFSAEGLTCLDVGASTGGFTDVLLTRGA
CEEEEEEEECCCCCCCCHHCCCEEHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCC
AKVYAVDVGYGQLAHKLRTDERVIVLERTNARHLDATLIPEPVGAVVCDASFIGLRTVLP
CEEEEEECCHHHHHHHHCCCCEEEEEECCCCCCCCEECCCCCCCCEEECCHHHHHHHHHH
AALGRAAPGAFLVALIKPQFEVGRERVGKGGVVRDPALHAEVCTTITDWLAALPGWSVVG
HHHCCCCCCCEEEEEECCCHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCCCEEEE
LTESPIKGPEGNIEFLIGGRFSGV
CCCCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]