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The map label for this gene is xseB [H]

Identifier: 83593949

GI number: 83593949

Start: 3045636

End: 3046004

Strand: Direct

Name: xseB [H]

Synonym: Rru_A2617

Alternate gene names: 83593949

Gene position: 3045636-3046004 (Clockwise)

Preceding gene: 83593948

Following gene: 83593950

Centisome position: 69.97

GC content: 66.12

Gene sequence:

>369_bases
GTGCGCGGGGCGGTTGCTCCGCGCCCCGCCTGTCGTTACAATCCCGCGCCTTTGCAGCAGCCGAAGGCCGTCATGTCCGA
CGATATCAAACACGGCGTCTCCCGCGGCCCCTCGGGCTCCGGCGCGGATGAAAATGGCATCGACATCGCCAGCCTGTCTT
TCGAACAGGCTTTGACCGAACTCGAGTCCATCGTGCGCAAGCTCGAACAGGGAACGATCGAGCTTGATCAGGCGGTCGGC
GCCTATGAGCGGGGGGTCGCCCTCAAGCGCCATTGCGAAGCCAAGCTCGCCGAGGCGCGGATGAAGGTCGAGCGCATTTC
CCTGGGCCCCGACGGCAGCGTCGGCACCGCCCCCTTCGATGCGACGTGA

Upstream 100 bases:

>100_bases
CTGGCCTCTTGCGTCTCGGCTCACGTCAAGACCTTGATGGAACGCTGACCCCGCCCGAAAACCGCCGGGCTTTGGCGTAA
ACGCGGTTTCGGTGGGCGGT

Downstream 100 bases:

>100_bases
AAGACCATCGGCGAGACCGGAGCATTCATGAAGTGGGGGACCTTGGGACCGTGAGTCATCTCAACGAAGTCATGGCCGCC
GAAGCGCTGGCCATCAACGA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MRGAVAPRPACRYNPAPLQQPKAVMSDDIKHGVSRGPSGSGADENGIDIASLSFEQALTELESIVRKLEQGTIELDQAVG
AYERGVALKRHCEAKLAEARMKVERISLGPDGSVGTAPFDAT

Sequences:

>Translated_122_residues
MRGAVAPRPACRYNPAPLQQPKAVMSDDIKHGVSRGPSGSGADENGIDIASLSFEQALTELESIVRKLEQGTIELDQAVG
AYERGVALKRHCEAKLAEARMKVERISLGPDGSVGTAPFDAT
>Mature_122_residues
MRGAVAPRPACRYNPAPLQQPKAVMSDDIKHGVSRGPSGSGADENGIDIASLSFEQALTELESIVRKLEQGTIELDQAVG
AYERGVALKRHCEAKLAEARMKVERISLGPDGSVGTAPFDAT

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 12931; Mature: 12931

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGAVAPRPACRYNPAPLQQPKAVMSDDIKHGVSRGPSGSGADENGIDIASLSFEQALTE
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
LESIVRKLEQGTIELDQAVGAYERGVALKRHCEAKLAEARMKVERISLGPDGSVGTAPFD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
AT
CC
>Mature Secondary Structure
MRGAVAPRPACRYNPAPLQQPKAVMSDDIKHGVSRGPSGSGADENGIDIASLSFEQALTE
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
LESIVRKLEQGTIELDQAVGAYERGVALKRHCEAKLAEARMKVERISLGPDGSVGTAPFD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
AT
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA