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The map label for this gene is yfgC [C]

Identifier: 83593760

GI number: 83593760

Start: 2825285

End: 2826658

Strand: Direct

Name: yfgC [C]

Synonym: Rru_A2425

Alternate gene names: 83593760

Gene position: 2825285-2826658 (Clockwise)

Preceding gene: 83593757

Following gene: 83593761

Centisome position: 64.91

GC content: 63.83

Gene sequence:

>1374_bases
ATGCGCCTTCTCATTGCTGGTAGGCTTTTCTTCGGGCTTGGCTTGGCCTTATGGGCGCTGGGCGCCGGACCAAGTCCCGC
CAGGGCGGCGGGCATGTCGCTGATCCGCGACGCGGAAATCGAAAATACCATCGCGATGATCGCGACGCCACTGTTGCGCG
CGGCGAGCATCGGCGATCGGGCCATCACCTTCCGATTGATAAACGACGATACGATCAACGCCTTCGCCACGACCGAGATG
CGGGTTTTCGTCTATACCGGGTTGTTTCTCAAAACCGAAGGGCCAGACGAACTCAAAGGCGTCATCGCCCACGAAATGGG
CCATCTCGCCGGCGGCCATTTGCTGCGCATGAAGGACGAAATGGCCAATGCGTCGATGACGGCGCTGGTTGGCATGCTGG
CCGGAGCGGCGGCCGGTATCGCCAGCGGTCGCGGCGATGTCGGCAGCGCGGTGATGATGGGCACCAATCAGGCGGCGATG
CGCGGTTTTCTGACCTTCAGCCGCACCCAGGAAAGCTCGGCCGATTCCTTTGCCATGCGCATGCTTGACGCCACGGGGCA
ATCGGCGGCGGGCATGCTGAAGTTCTTTCGCAAACTGGGCGATCAGGAAGCCTTGATCACCGCCAGCCAGGACCCTTACG
TTCGCACCCACCCGCTGACCCGCGATCGCATCACCGCCGTGGCCGACCACGTCGCCCATTCCCGTTTCAGCGACGTTCCG
CCCTCCCCCGCCGAGGTCCTGGCCTATCAGCGGGCCAAGGCCAAGCTGATGGCCTTCCTCAAATCCACCGGCGCCACCCT
GGCCGCCTATCCCGCGACCGATCGATCGGTCGCGGCCCGCTATGCCCGGGCCATCGCCTATTACCGGGCGGGTGATCTTG
GCCGCGCCCTGCCGCTGATCGACGGCCTGATCGCCGAGGATCCGAACGATCCCTATTTCGAGGAACTGCGCGGCCAGATG
TTGTTTGAAAACCAACGTCTGCGCGAAGCGCTCGGCTCCTATACTAAGGCCGCCCGCCTCGCCCCCACCGAACCGCTTAT
TCTGGTGTCCCTGGCCCATGTCCAGGTGGAATTGGGCGACCGGCCTTTGCTTGAAAACGCCCTGACCAATCTCAACGCCG
CGCTCGGGCTTGATCCGACCAATTCCTTCGCTTGGCGGCAGATGGCCAACGCCTCGGGCAAACTGGGCGACGAGGCGATG
GCGGCCTATTATCTGGCCGAGATGGCCCTGTCCCAGGGCGACCCACGCGAGGCTTTGGCCCATGCCAAACGGGCCGAGGG
ACGCATCCCCAAGGGCTCACCCCAGGGCTTGCGCCTTCAGGATCTGATCGCCGAGGCCGAGCGCCAGAAGAAACGCCAGG
AAGATCGCGATTAA

Upstream 100 bases:

>100_bases
GGCAAGAACGGCCAGAACAGACCGGCGGGCGCGTTGACGGACCCGCCGCCGCCCCTTAGCTTGGGGAAACATCCGGTCTA
TGGAGATCATGGTGAAGCGC

Downstream 100 bases:

>100_bases
CGCGGCCCTGTCATCGCGAGGAACCCCAGGATCGTTTGTTCGTCCGTCGTTTCGAGGAGGTCCTTGCCTTGCCCACCGCC
ATGACCGCCCTGCTCGGCTG

Product: peptidase M48

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MRLLIAGRLFFGLGLALWALGAGPSPARAAGMSLIRDAEIENTIAMIATPLLRAASIGDRAITFRLINDDTINAFATTEM
RVFVYTGLFLKTEGPDELKGVIAHEMGHLAGGHLLRMKDEMANASMTALVGMLAGAAAGIASGRGDVGSAVMMGTNQAAM
RGFLTFSRTQESSADSFAMRMLDATGQSAAGMLKFFRKLGDQEALITASQDPYVRTHPLTRDRITAVADHVAHSRFSDVP
PSPAEVLAYQRAKAKLMAFLKSTGATLAAYPATDRSVAARYARAIAYYRAGDLGRALPLIDGLIAEDPNDPYFEELRGQM
LFENQRLREALGSYTKAARLAPTEPLILVSLAHVQVELGDRPLLENALTNLNAALGLDPTNSFAWRQMANASGKLGDEAM
AAYYLAEMALSQGDPREALAHAKRAEGRIPKGSPQGLRLQDLIAEAERQKKRQEDRD

Sequences:

>Translated_457_residues
MRLLIAGRLFFGLGLALWALGAGPSPARAAGMSLIRDAEIENTIAMIATPLLRAASIGDRAITFRLINDDTINAFATTEM
RVFVYTGLFLKTEGPDELKGVIAHEMGHLAGGHLLRMKDEMANASMTALVGMLAGAAAGIASGRGDVGSAVMMGTNQAAM
RGFLTFSRTQESSADSFAMRMLDATGQSAAGMLKFFRKLGDQEALITASQDPYVRTHPLTRDRITAVADHVAHSRFSDVP
PSPAEVLAYQRAKAKLMAFLKSTGATLAAYPATDRSVAARYARAIAYYRAGDLGRALPLIDGLIAEDPNDPYFEELRGQM
LFENQRLREALGSYTKAARLAPTEPLILVSLAHVQVELGDRPLLENALTNLNAALGLDPTNSFAWRQMANASGKLGDEAM
AAYYLAEMALSQGDPREALAHAKRAEGRIPKGSPQGLRLQDLIAEAERQKKRQEDRD
>Mature_457_residues
MRLLIAGRLFFGLGLALWALGAGPSPARAAGMSLIRDAEIENTIAMIATPLLRAASIGDRAITFRLINDDTINAFATTEM
RVFVYTGLFLKTEGPDELKGVIAHEMGHLAGGHLLRMKDEMANASMTALVGMLAGAAAGIASGRGDVGSAVMMGTNQAAM
RGFLTFSRTQESSADSFAMRMLDATGQSAAGMLKFFRKLGDQEALITASQDPYVRTHPLTRDRITAVADHVAHSRFSDVP
PSPAEVLAYQRAKAKLMAFLKSTGATLAAYPATDRSVAARYARAIAYYRAGDLGRALPLIDGLIAEDPNDPYFEELRGQM
LFENQRLREALGSYTKAARLAPTEPLILVSLAHVQVELGDRPLLENALTNLNAALGLDPTNSFAWRQMANASGKLGDEAM
AAYYLAEMALSQGDPREALAHAKRAEGRIPKGSPQGLRLQDLIAEAERQKKRQEDRD

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=379, Percent_Identity=27.1767810026385, Blast_Score=98, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 49220; Mature: 49220

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLIAGRLFFGLGLALWALGAGPSPARAAGMSLIRDAEIENTIAMIATPLLRAASIGDR
CEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AITFRLINDDTINAFATTEMRVFVYTGLFLKTEGPDELKGVIAHEMGHLAGGHLLRMKDE
EEEEEEECCCCCCEEEECCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEHHH
MANASMTALVGMLAGAAAGIASGRGDVGSAVMMGTNQAAMRGFLTFSRTQESSADSFAMR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHH
MLDATGQSAAGMLKFFRKLGDQEALITASQDPYVRTHPLTRDRITAVADHVAHSRFSDVP
HHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCC
PSPAEVLAYQRAKAKLMAFLKSTGATLAAYPATDRSVAARYARAIAYYRAGDLGRALPLI
CCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
DGLIAEDPNDPYFEELRGQMLFENQRLREALGSYTKAARLAPTEPLILVSLAHVQVELGD
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCC
RPLLENALTNLNAALGLDPTNSFAWRQMANASGKLGDEAMAAYYLAEMALSQGDPREALA
CHHHHHHHHHCCHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
HAKRAEGRIPKGSPQGLRLQDLIAEAERQKKRQEDRD
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLLIAGRLFFGLGLALWALGAGPSPARAAGMSLIRDAEIENTIAMIATPLLRAASIGDR
CEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AITFRLINDDTINAFATTEMRVFVYTGLFLKTEGPDELKGVIAHEMGHLAGGHLLRMKDE
EEEEEEECCCCCCEEEECCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEHHH
MANASMTALVGMLAGAAAGIASGRGDVGSAVMMGTNQAAMRGFLTFSRTQESSADSFAMR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHH
MLDATGQSAAGMLKFFRKLGDQEALITASQDPYVRTHPLTRDRITAVADHVAHSRFSDVP
HHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCC
PSPAEVLAYQRAKAKLMAFLKSTGATLAAYPATDRSVAARYARAIAYYRAGDLGRALPLI
CCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
DGLIAEDPNDPYFEELRGQMLFENQRLREALGSYTKAARLAPTEPLILVSLAHVQVELGD
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCC
RPLLENALTNLNAALGLDPTNSFAWRQMANASGKLGDEAMAAYYLAEMALSQGDPREALA
CHHHHHHHHHCCHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
HAKRAEGRIPKGSPQGLRLQDLIAEAERQKKRQEDRD
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]