| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
Click here to switch to the map view.
The map label for this gene is dppD [H]
Identifier: 83593694
GI number: 83593694
Start: 2746065
End: 2747093
Strand: Direct
Name: dppD [H]
Synonym: Rru_A2359
Alternate gene names: 83593694
Gene position: 2746065-2747093 (Clockwise)
Preceding gene: 83593693
Following gene: 83593695
Centisome position: 63.09
GC content: 66.57
Gene sequence:
>1029_bases ATGTCCTTGCTTGAAATCGAGAACCTGACCGTAGAATTCGGCAGCGGCGACAAACCGTTCCGCGCCGTCGAGGACGTCAG CTTTTCCGTCGATGCCGGAGAGGTTCTGGGCATCGTCGGCGAAAGCGGCTCGGGAAAATCCGTCAGCTCGCTGGCGATGA TGGGTCTGGTCGCCTATCCCGGGCGGGTCAAGGCCAGCAAGATGGTGTTTGACGGCATCGATCTGCTGACGCTGTCGGGC CGCCAGCGTCGCAAGCTGACCGGCTCGGACGTGGCGATGATCTTCCAAGAGCCGATGACCAGCCTCAACCCCTGTTTCAC CATCGGCTATCAGATCACCGAGACCCTGAAGATCCACCAGGGCGGCACCCGCGCCCAACGCCGGGACCGGGCCATCGAAT TGCTGTCCCAGGTTGGCATCCCCGATCCGGGATCGCGCCTGGGCCTGTTTCCCCACCAGCTTTCCGGCGGCATGAGCCAG CGGGTGATGATCGCCATGGCCGTCGCCTGCGATCCCCGTCTGCTGATCGCCGACGAGCCGACGACGGCGCTTGATGTCAC CATCCAGGCGCAGATCATGCACCTGCTGCTGACCCTGCAGGAAAAGCGCGGCATGGGCATGGTGCTGATCACCCACGACC TTGCCGTGGTCGCCGAGGCCGCCCATCGGGTGGTGGTGATGTATGCCGGTCAGGTGATGGAAACCGGGGCGGTGCCGGCG ATCTTCGATCGTCCCCACCACCCCTATACCGCCGCCCTGCTCGAGGCCCTGCCCGAACGGGCCGAGGGCAAGCGTCGGCT CAACACCATTCCCGGCGTGGTGCCGGGCGCCCACGACCGCCCCAAGGGCTGTTTGCTGGCGCCGCGCTGCGCCTTCGCCC AGGACCGTTGCCGGGCCGAACGGCCGAGCCTGACCCCCACCGATAGCGGACAGGTTCGCTGCTTCTTCCCCCTGTCGGCC CCCGATCCCCTGAAGGCGCCGCCGCCGGCCGCCCTGGACATCGATATCCGTGGAGAGGCCCGGCCATGA
Upstream 100 bases:
>100_bases CCCGGGCTTGCCATCCTGTTCACGGTGCTGGCCTTCAATCTGATGGGCGACGGCCTGCGCGATGCCCTCGATCCCCGCAT GAAGCGGTGAGAGTCCTGCC
Downstream 100 bases:
>100_bases CTCCTGCGATCCCCACCGCGCATTCCCCCCTGCCGGGGACCGAGGCCGTGATGCCGGTTCTCGAGGCCCAGGGGCTGACC AAGCGCTATTCGGTGGCCCG
Product: oligopeptide/dipeptide ABC transporter ATP-binding protein-like
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MSLLEIENLTVEFGSGDKPFRAVEDVSFSVDAGEVLGIVGESGSGKSVSSLAMMGLVAYPGRVKASKMVFDGIDLLTLSG RQRRKLTGSDVAMIFQEPMTSLNPCFTIGYQITETLKIHQGGTRAQRRDRAIELLSQVGIPDPGSRLGLFPHQLSGGMSQ RVMIAMAVACDPRLLIADEPTTALDVTIQAQIMHLLLTLQEKRGMGMVLITHDLAVVAEAAHRVVVMYAGQVMETGAVPA IFDRPHHPYTAALLEALPERAEGKRRLNTIPGVVPGAHDRPKGCLLAPRCAFAQDRCRAERPSLTPTDSGQVRCFFPLSA PDPLKAPPPAALDIDIRGEARP
Sequences:
>Translated_342_residues MSLLEIENLTVEFGSGDKPFRAVEDVSFSVDAGEVLGIVGESGSGKSVSSLAMMGLVAYPGRVKASKMVFDGIDLLTLSG RQRRKLTGSDVAMIFQEPMTSLNPCFTIGYQITETLKIHQGGTRAQRRDRAIELLSQVGIPDPGSRLGLFPHQLSGGMSQ RVMIAMAVACDPRLLIADEPTTALDVTIQAQIMHLLLTLQEKRGMGMVLITHDLAVVAEAAHRVVVMYAGQVMETGAVPA IFDRPHHPYTAALLEALPERAEGKRRLNTIPGVVPGAHDRPKGCLLAPRCAFAQDRCRAERPSLTPTDSGQVRCFFPLSA PDPLKAPPPAALDIDIRGEARP >Mature_341_residues SLLEIENLTVEFGSGDKPFRAVEDVSFSVDAGEVLGIVGESGSGKSVSSLAMMGLVAYPGRVKASKMVFDGIDLLTLSGR QRRKLTGSDVAMIFQEPMTSLNPCFTIGYQITETLKIHQGGTRAQRRDRAIELLSQVGIPDPGSRLGLFPHQLSGGMSQR VMIAMAVACDPRLLIADEPTTALDVTIQAQIMHLLLTLQEKRGMGMVLITHDLAVVAEAAHRVVVMYAGQVMETGAVPAI FDRPHHPYTAALLEALPERAEGKRRLNTIPGVVPGAHDRPKGCLLAPRCAFAQDRCRAERPSLTPTDSGQVRCFFPLSAP DPLKAPPPAALDIDIRGEARP
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI255708477, Length=217, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI148612844, Length=217, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI42741659, Length=220, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI9665248, Length=239, Percent_Identity=28.4518828451883, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1789963, Length=319, Percent_Identity=66.7711598746082, Blast_Score=451, Evalue=1e-128, Organism=Escherichia coli, GI48994883, Length=319, Percent_Identity=47.0219435736677, Blast_Score=281, Evalue=6e-77, Organism=Escherichia coli, GI1787548, Length=327, Percent_Identity=44.954128440367, Blast_Score=276, Evalue=1e-75, Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=52.6515151515151, Blast_Score=270, Evalue=1e-73, Organism=Escherichia coli, GI1787759, Length=318, Percent_Identity=41.5094339622642, Blast_Score=247, Evalue=8e-67, Organism=Escherichia coli, GI1788506, Length=258, Percent_Identity=48.062015503876, Blast_Score=228, Evalue=6e-61, Organism=Escherichia coli, GI1787500, Length=327, Percent_Identity=38.2262996941896, Blast_Score=209, Evalue=3e-55, Organism=Escherichia coli, GI1789962, Length=296, Percent_Identity=35.8108108108108, Blast_Score=190, Evalue=1e-49, Organism=Escherichia coli, GI1787758, Length=331, Percent_Identity=35.6495468277946, Blast_Score=189, Evalue=2e-49, Organism=Escherichia coli, GI1789890, Length=253, Percent_Identity=37.1541501976285, Blast_Score=144, Evalue=8e-36, Organism=Escherichia coli, GI48994997, Length=259, Percent_Identity=35.5212355212355, Blast_Score=143, Evalue=2e-35, Organism=Escherichia coli, GI1787547, Length=278, Percent_Identity=32.0143884892086, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI1789891, Length=243, Percent_Identity=35.3909465020576, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI1786398, Length=254, Percent_Identity=31.496062992126, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1789032, Length=228, Percent_Identity=31.5789473684211, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1788225, Length=260, Percent_Identity=32.6923076923077, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI87081791, Length=279, Percent_Identity=31.5412186379928, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787029, Length=243, Percent_Identity=27.9835390946502, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI87081834, Length=231, Percent_Identity=34.6320346320346, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786703, Length=233, Percent_Identity=32.1888412017167, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787105, Length=233, Percent_Identity=33.0472103004292, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1789672, Length=254, Percent_Identity=27.9527559055118, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1787370, Length=229, Percent_Identity=30.5676855895196, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1788761, Length=292, Percent_Identity=29.1095890410959, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI87081709, Length=253, Percent_Identity=26.8774703557312, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1786563, Length=233, Percent_Identity=30.4721030042918, Blast_Score=95, Evalue=8e-21, Organism=Escherichia coli, GI1787089, Length=218, Percent_Identity=34.4036697247706, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786872, Length=250, Percent_Identity=31.6, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1788450, Length=243, Percent_Identity=28.8065843621399, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1787712, Length=253, Percent_Identity=28.8537549407115, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1790162, Length=254, Percent_Identity=26.7716535433071, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1788644, Length=189, Percent_Identity=29.6296296296296, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=30.5555555555556, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1789593, Length=250, Percent_Identity=28.4, Blast_Score=82, Evalue=7e-17, Organism=Escherichia coli, GI1789991, Length=239, Percent_Identity=28.8702928870293, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786345, Length=218, Percent_Identity=31.1926605504587, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI87082267, Length=242, Percent_Identity=26.4462809917355, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1786253, Length=212, Percent_Identity=28.7735849056604, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787792, Length=241, Percent_Identity=27.8008298755187, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790467, Length=276, Percent_Identity=25, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786319, Length=240, Percent_Identity=28.3333333333333, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI48994943, Length=225, Percent_Identity=26.6666666666667, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=29.3838862559242, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787143, Length=237, Percent_Identity=29.1139240506329, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1790544, Length=276, Percent_Identity=24.6376811594203, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786654, Length=236, Percent_Identity=28.3898305084746, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788472, Length=241, Percent_Identity=24.896265560166, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1786803, Length=259, Percent_Identity=25.0965250965251, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI212646699, Length=215, Percent_Identity=27.4418604651163, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193209708, Length=223, Percent_Identity=31.390134529148, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI193211017, Length=230, Percent_Identity=25.6521739130435, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193211015, Length=230, Percent_Identity=25.6521739130435, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71996809, Length=230, Percent_Identity=25.6521739130435, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17567265, Length=233, Percent_Identity=29.1845493562232, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115534520, Length=230, Percent_Identity=29.5652173913043, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193208177, Length=240, Percent_Identity=29.5833333333333, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193202349, Length=228, Percent_Identity=26.3157894736842, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17558664, Length=258, Percent_Identity=27.5193798449612, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71992290, Length=238, Percent_Identity=28.9915966386555, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17511077, Length=227, Percent_Identity=30.8370044052863, Blast_Score=68, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17541710, Length=261, Percent_Identity=26.0536398467433, Blast_Score=68, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17569143, Length=253, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71984940, Length=239, Percent_Identity=27.1966527196653, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17543740, Length=240, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17569145, Length=233, Percent_Identity=27.0386266094421, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI25146777, Length=233, Percent_Identity=25.7510729613734, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=262, Percent_Identity=29.0076335877863, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323217, Length=246, Percent_Identity=30.0813008130081, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641565, Length=240, Percent_Identity=32.0833333333333, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI85726357, Length=253, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574150, Length=232, Percent_Identity=22.4137931034483, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI116007328, Length=232, Percent_Identity=22.4137931034483, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI28574744, Length=171, Percent_Identity=32.1637426900585, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36806; Mature: 36675
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLEIENLTVEFGSGDKPFRAVEDVSFSVDAGEVLGIVGESGSGKSVSSLAMMGLVAYP CCEEEEEEEEEEECCCCCCCHHHHCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCC GRVKASKMVFDGIDLLTLSGRQRRKLTGSDVAMIFQEPMTSLNPCFTIGYQITETLKIHQ CCCCCCCEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEECEEEEEEEEEEC GGTRAQRRDRAIELLSQVGIPDPGSRLGLFPHQLSGGMSQRVMIAMAVACDPRLLIADEP CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHEEEEEEEECCCEEEEECCC TTALDVTIQAQIMHLLLTLQEKRGMGMVLITHDLAVVAEAAHRVVVMYAGQVMETGAVPA CCEEEEEHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCEEEEEECCCHHHCCCCCH IFDRPHHPYTAALLEALPERAEGKRRLNTIPGVVPGAHDRPKGCLLAPRCAFAQDRCRAE HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCC RPSLTPTDSGQVRCFFPLSAPDPLKAPPPAALDIDIRGEARP CCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCC >Mature Secondary Structure SLLEIENLTVEFGSGDKPFRAVEDVSFSVDAGEVLGIVGESGSGKSVSSLAMMGLVAYP CEEEEEEEEEEECCCCCCCHHHHCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCC GRVKASKMVFDGIDLLTLSGRQRRKLTGSDVAMIFQEPMTSLNPCFTIGYQITETLKIHQ CCCCCCCEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEECEEEEEEEEEEC GGTRAQRRDRAIELLSQVGIPDPGSRLGLFPHQLSGGMSQRVMIAMAVACDPRLLIADEP CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHEEEEEEEECCCEEEEECCC TTALDVTIQAQIMHLLLTLQEKRGMGMVLITHDLAVVAEAAHRVVVMYAGQVMETGAVPA CCEEEEEHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCEEEEEECCCHHHCCCCCH IFDRPHHPYTAALLEALPERAEGKRRLNTIPGVVPGAHDRPKGCLLAPRCAFAQDRCRAE HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCC RPSLTPTDSGQVRCFFPLSAPDPLKAPPPAALDIDIRGEARP CCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]