Click here to switch to the map view.

The map label for this gene is yeaM [H]

Identifier: 83593670

GI number: 83593670

Start: 2704345

End: 2705181

Strand: Direct

Name: yeaM [H]

Synonym: Rru_A2335

Alternate gene names: 83593670

Gene position: 2704345-2705181 (Clockwise)

Preceding gene: 83593668

Following gene: 83593676

Centisome position: 62.13

GC content: 60.33

Gene sequence:

>837_bases
ATGATCTCTAAATTGGGCCAATCCAAAAAGAGCGTCCGTCCCTGCAGCTCCGACTTCGATCCGGATCACTGGGACGGCCC
GGCGGTCGCGCTGCATGTCGACTTCAGCGACTACGAAGCCGAAGTGCCACACCATCGGCATCGGCAAGGACAACTCATTA
TGGCCTTGCATGGGGCGGTGACGTGTACGGCTGCCAACGGTCTTTGGATCGTGCCGCCAGGCTCCGCGGTCTGGATCCCC
GGGGGCGTTTCACACAGCAATCAGGTCACCGCCAACGCTCGGCTGTCCTACCTGTTCGTCGAACCCGAAGCCGCGCTGCT
GCCGCAGGACTGCTGTACGCTCTCCGTCTCGCCGATGCTTCGTGAAATGATTCTGCGTCTCGCCGACGCATCGGGCCACG
ATGAGCCGAAGGACCATCGTGGCCGCCTTGTGCGGGTCATGCTGGACGAACTCGCGTTGATGCCAACAGGGGGGCTTAAG
CTACCCGTCTCCCATCATCCCAAGATTGCGATGATCGCGTCCGCCTTGGCGGCCCAGCCGGGAGATCGTCGCACCTTGAT
GGAGTGGGCAAGCCACGTCGCCATGAGCGAGAGATCCTTGAAGCGGTTGATGATCCAAGAAACCGGACTGAGCTTTGGTC
GGTGGAGACGGCAACTCCATCTGATCGTCGCGTTACGCGAACTGGCCAGCGGCGCTTCGGTGCAAAGTGTTTCGCTCTCC
CTGGGATATGAGTCCGCCACGGCATTCATTGTGATGTTCAAAAAGGCGCTAGGAACAACACCGGCCCGATATCTTCCCAA
TCGCAGTCCCGATCAGGAAGGTCTGGGTGACGGCTGA

Upstream 100 bases:

>100_bases
GCGCCGACAACAGCAATCCGCATGACAATCTCCAATGTCGTTATGATCGATCGCCAACGGTAGCGGATTGTGGCTTCGGC
GCATTTGGATATAATGCCTA

Downstream 100 bases:

>100_bases
AACAGGATCGATCCTGCCGATAAGGTCTGGCGGGAGCGATTTCAGAAACTCGGCTAGACAGCGAGAAACGGGCCGGCTTG
GGGCAGACAAAGCAGCCGCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MISKLGQSKKSVRPCSSDFDPDHWDGPAVALHVDFSDYEAEVPHHRHRQGQLIMALHGAVTCTAANGLWIVPPGSAVWIP
GGVSHSNQVTANARLSYLFVEPEAALLPQDCCTLSVSPMLREMILRLADASGHDEPKDHRGRLVRVMLDELALMPTGGLK
LPVSHHPKIAMIASALAAQPGDRRTLMEWASHVAMSERSLKRLMIQETGLSFGRWRRQLHLIVALRELASGASVQSVSLS
LGYESATAFIVMFKKALGTTPARYLPNRSPDQEGLGDG

Sequences:

>Translated_278_residues
MISKLGQSKKSVRPCSSDFDPDHWDGPAVALHVDFSDYEAEVPHHRHRQGQLIMALHGAVTCTAANGLWIVPPGSAVWIP
GGVSHSNQVTANARLSYLFVEPEAALLPQDCCTLSVSPMLREMILRLADASGHDEPKDHRGRLVRVMLDELALMPTGGLK
LPVSHHPKIAMIASALAAQPGDRRTLMEWASHVAMSERSLKRLMIQETGLSFGRWRRQLHLIVALRELASGASVQSVSLS
LGYESATAFIVMFKKALGTTPARYLPNRSPDQEGLGDG
>Mature_278_residues
MISKLGQSKKSVRPCSSDFDPDHWDGPAVALHVDFSDYEAEVPHHRHRQGQLIMALHGAVTCTAANGLWIVPPGSAVWIP
GGVSHSNQVTANARLSYLFVEPEAALLPQDCCTLSVSPMLREMILRLADASGHDEPKDHRGRLVRVMLDELALMPTGGLK
LPVSHHPKIAMIASALAAQPGDRRTLMEWASHVAMSERSLKRLMIQETGLSFGRWRRQLHLIVALRELASGASVQSVSLS
LGYESATAFIVMFKKALGTTPARYLPNRSPDQEGLGDG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=249, Percent_Identity=52.2088353413655, Blast_Score=258, Evalue=3e-70,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30304; Mature: 30304

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKLGQSKKSVRPCSSDFDPDHWDGPAVALHVDFSDYEAEVPHHRHRQGQLIMALHGAV
CCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECEE
TCTAANGLWIVPPGSAVWIPGGVSHSNQVTANARLSYLFVEPEAALLPQDCCTLSVSPML
EEEECCCEEEECCCCEEEECCCCCCCCEEEECCEEEEEEECCCHHHCCCHHHEEEHHHHH
REMILRLADASGHDEPKDHRGRLVRVMLDELALMPTGGLKLPVSHHPKIAMIASALAAQP
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHCCC
GDRRTLMEWASHVAMSERSLKRLMIQETGLSFGRWRRQLHLIVALRELASGASVQSVSLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
LGYESATAFIVMFKKALGTTPARYLPNRSPDQEGLGDG
CCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MISKLGQSKKSVRPCSSDFDPDHWDGPAVALHVDFSDYEAEVPHHRHRQGQLIMALHGAV
CCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECEE
TCTAANGLWIVPPGSAVWIPGGVSHSNQVTANARLSYLFVEPEAALLPQDCCTLSVSPML
EEEECCCEEEECCCCEEEECCCCCCCCEEEECCEEEEEEECCCHHHCCCHHHEEEHHHHH
REMILRLADASGHDEPKDHRGRLVRVMLDELALMPTGGLKLPVSHHPKIAMIASALAAQP
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHCCC
GDRRTLMEWASHVAMSERSLKRLMIQETGLSFGRWRRQLHLIVALRELASGASVQSVSLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
LGYESATAFIVMFKKALGTTPARYLPNRSPDQEGLGDG
CCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]