Click here to switch to the map view.

The map label for this gene is xerD

Identifier: 82751090

GI number: 82751090

Start: 1486709

End: 1487596

Strand: Reverse

Name: xerD

Synonym: SAB1358c

Alternate gene names: 82751090

Gene position: 1487596-1486709 (Counterclockwise)

Preceding gene: 82751091

Following gene: 82751088

Centisome position: 54.24

GC content: 33.78

Gene sequence:

>888_bases
ATGGAAACAATTATTGAAGAATATTTGCGTTTTATACAAATTGAAAAAGGACTAAGTTCTAACACAATTGGTGCTTATAG
ACGTGATTTGAAAAAGTATCAAGATTATATGACTGAACATCATATCTCGCATATTGATTTTATAGATCGACAATTAATTC
AAGAGTGTTTGGGGCATTTAATAGACCAAGGGCAATCTGCTAAATCTATTGCGCGATTTATTTCAACAATCCGTAGTTTT
CATCAATTTGCTATAAGAGAAAAATATGCGGCGAAAGATCCAACGGTATTATTAGATTCACCAAAATATGACAAAAAATT
GCCTGACGTTTTAAATGTTGACGAAGTGTTGGCTTTATTAGAAACGCTGGATTTAAATAAAATTAATGGTTATCGTGATC
GTACGATGTTAGAACTTCTGTACGCAACGGGAATGCGTGTATCTGAATTGATACATTTAGAGTTAGAGAACGTGAACTTA
ATAATGGGGTTTGTACGCGTATTTGGTAAAGGCGATAAAGAAAGAATTGTACCATTAGGCGACGCAGTCATTGAGTACTT
AACCACTTATATTGAAACGATTAGACCGCAACTTTTAAAAAAGACTGTTACCGAAGTCTTATTTTTAAATATGCATGGTA
AACCTTTATCACGACAAGCAATATGGAAAATGATTAAACAAAATGGTGTAAAGGCAAACATTAAAAAGACGTTAACGCCA
CATACGTTACGCCACTCTTTTGCGACACATTTATTGGAAAATGGCGCAGATTTAAGGGCAGTGCAAGAGATGTTAGGTCA
CTCTGACATATCTACTACCCAACTCTATACACATGTTTCAAAATCTCAAATTAGAAAAATGTATAACCAATTTCATCCTA
GAGCATAA

Upstream 100 bases:

>100_bases
TTTAACTTTCCATGGTGTGTGTGAAACGTGCCAAGCTAAAGGTAAAGGATAGTAAATTGCGTAGGTTAAATTAACCTTCG
CTTTTTTTAGAGGTGTGGTT

Downstream 100 bases:

>100_bases
CGTGAACCATGACTCAAAAGTCACAATACATATGACTAAAAATGTCTGTGCTATTGTGGCTTTTTTAAATTGGTTGATTA
ATTACGTCTATTTTTTCTTA

Product: site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQGQSAKSIARFISTIRSF
HQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETLDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNL
IMGFVRVFGKGDKERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA

Sequences:

>Translated_295_residues
METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQGQSAKSIARFISTIRSF
HQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETLDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNL
IMGFVRVFGKGDKERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
>Mature_295_residues
METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQGQSAKSIARFISTIRSF
HQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETLDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNL
IMGFVRVFGKGDKERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=292, Percent_Identity=43.4931506849315, Blast_Score=247, Evalue=8e-67,
Organism=Escherichia coli, GI1790244, Length=295, Percent_Identity=34.2372881355932, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1790768, Length=181, Percent_Identity=28.7292817679558, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790767, Length=196, Percent_Identity=27.0408163265306, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34149; Mature: 34149

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHH
ETLDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG
HHHCCHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCH
HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHH
ETLDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG
HHHCCHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCH
HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA