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The map label for this gene is ygdD [C]

Identifier: 82750288

GI number: 82750288

Start: 597536

End: 597904

Strand: Direct

Name: ygdD [C]

Synonym: SAB0533

Alternate gene names: 82750288

Gene position: 597536-597904 (Clockwise)

Preceding gene: 82750287

Following gene: 82750289

Centisome position: 21.79

GC content: 33.06

Gene sequence:

>369_bases
ATGAAATTATTTATTATTTTAGGTGCATTAAACGCGATGATGGCTGTCGGAACAGGTGCATTTGGTGCGCATGGTTTACA
AGGAAAAATAAGTGATCACTATTTATCAGTATGGGAAAAAGCAACGACGTATCAAATGTACCATGGCTTAGCATTATTAA
TTATAGGTGTAATTAGTGGTACAACTTCAATCAATGTTAACTGGGCTGGCTGGTTAATATTTGCTGGTATTATTTTCTTT
AGTGGATCATTATATATTTTAGTATTAACTCAAATTAAAGTTTTAGGTACGATTACGCCAATTGGTGGCGTATTGTTTAT
CATTGGATGGATAATGTTAATCATTGCGACATTCAAATTTGCTGGTTAA

Upstream 100 bases:

>100_bases
TTGTTAAGTATGTAGGTTAATAATCAAGACGCATATACTTTTATTCGAGTGTTCGGATTTAAACATTTATTAATACTGAA
TTATATAAGGAGAGGTAGCA

Downstream 100 bases:

>100_bases
ATTTTAAAACTTTAGATTACCTATGTAACTAAACATTAAATTTTTAATAAAAATAATCAAGAAAAAGAGTTACAAACTCA
TCTTTTGGGTATAGAATACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MKLFIILGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINVNWAGWLIFAGIIFF
SGSLYILVLTQIKVLGTITPIGGVLFIIGWIMLIIATFKFAG

Sequences:

>Translated_122_residues
MKLFIILGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINVNWAGWLIFAGIIFF
SGSLYILVLTQIKVLGTITPIGGVLFIIGWIMLIIATFKFAG
>Mature_122_residues
MKLFIILGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINVNWAGWLIFAGIIFF
SGSLYILVLTQIKVLGTITPIGGVLFIIGWIMLIIATFKFAG

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family

Homologues:

Organism=Escherichia coli, GI1789172, Length=119, Percent_Identity=31.0924369747899, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y533_STAAB (Q2YS64)

Other databases:

- EMBL:   AJ938182
- RefSeq:   YP_416029.1
- STRING:   Q2YS64
- EnsemblBacteria:   EBSTAT00000011133
- GeneID:   3795144
- GenomeReviews:   AJ938182_GR
- KEGG:   sab:SAB0533
- NMPDR:   fig|273036.3.peg.567
- eggNOG:   COG2363
- GeneTree:   EBGT00050000025405
- HOGENOM:   HBG700524
- OMA:   GPITPMG
- PhylomeDB:   Q2YS64
- ProtClustDB:   CLSK884743
- BioCyc:   SAUR273036:SAB0533-MONOMER
- InterPro:   IPR006696

Pfam domain/function: PF04241 DUF423

EC number: NA

Molecular weight: Translated: 13095; Mature: 13095

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x9699d38)-; HASH(0x16253d1c)-; HASH(0x15cc8978)-; HASH(0x16412038)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFIILGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISG
CEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TTSINVNWAGWLIFAGIIFFSGSLYILVLTQIKVLGTITPIGGVLFIIGWIMLIIATFKF
CEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
AG
CH
>Mature Secondary Structure
MKLFIILGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISG
CEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TTSINVNWAGWLIFAGIIFFSGSLYILVLTQIKVLGTITPIGGVLFIIGWIMLIIATFKF
CEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
AG
CH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA