Click here to switch to the map view.

The map label for this gene is ssb [H]

Identifier: 82703345

GI number: 82703345

Start: 2528410

End: 2528868

Strand: Reverse

Name: ssb [H]

Synonym: Nmul_A2227

Alternate gene names: 82703345

Gene position: 2528868-2528410 (Counterclockwise)

Preceding gene: 82703346

Following gene: 82703344

Centisome position: 79.42

GC content: 56.21

Gene sequence:

>459_bases
ATGGCATCAGTCAACAAAGTCATACTCATCGGCAACCTCGGCAAGGATCCCGAGACGCGCTATATGCCGAACGGTGACGC
GGTGACGAACATCACCGTGGCAACCACCGAGACCTGGAAAGACAAGAACGGCGAAAAGCAGGAAAAAACCGAGTGGCATC
GCGTCACCTTCTACCGCAAGCTGGCTGAGATCGCAGGCGAATACCTCAAGAAAGGACGCTCCGTCTATGTCGAAGGACGA
CTCGAAACGCGCAAATGGACCGACAAGTCGGGTGTCGAACGCTATACCACCGATGTCATCGCCACCGATATGAAAATGCT
TGGCAGCAAACCCGGCGGAGCCAGCTATGAAGCTCCGGAGAGGGAAGAGGGCGGATTCGCGCCGAGTTCATCCGGCGGCA
GGGCGCCTGCCAGAAGCAGCACCGGGTTTGATGATATGGATGATGATATTCCGTTCTGA

Upstream 100 bases:

>100_bases
GGCGCTGGTGCTTGCGAGCGAAGGGGTGGCTTACCTGAAAGTAGATATGCGTGGTTTTGATGAGCAGGGCGTTGCTCAAT
TACTTGGAGGGGAAGCATAA

Downstream 100 bases:

>100_bases
ACAGCTTAATTAAATCGATCATAAAACGGCGTAGGCCCAAGTCCTACGCCGTTTTAATTTTTACTTGCTGTCTTGGTTTA
GAAAGGTATTTATACGTCTA

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MASVNKVILIGNLGKDPETRYMPNGDAVTNITVATTETWKDKNGEKQEKTEWHRVTFYRKLAEIAGEYLKKGRSVYVEGR
LETRKWTDKSGVERYTTDVIATDMKMLGSKPGGASYEAPEREEGGFAPSSSGGRAPARSSTGFDDMDDDIPF

Sequences:

>Translated_152_residues
MASVNKVILIGNLGKDPETRYMPNGDAVTNITVATTETWKDKNGEKQEKTEWHRVTFYRKLAEIAGEYLKKGRSVYVEGR
LETRKWTDKSGVERYTTDVIATDMKMLGSKPGGASYEAPEREEGGFAPSSSGGRAPARSSTGFDDMDDDIPF
>Mature_151_residues
ASVNKVILIGNLGKDPETRYMPNGDAVTNITVATTETWKDKNGEKQEKTEWHRVTFYRKLAEIAGEYLKKGRSVYVEGRL
ETRKWTDKSGVERYTTDVIATDMKMLGSKPGGASYEAPEREEGGFAPSSSGGRAPARSSTGFDDMDDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=115, Percent_Identity=33.9130434782609, Blast_Score=79, Evalue=2e-15,
Organism=Escherichia coli, GI1790494, Length=121, Percent_Identity=62.8099173553719, Blast_Score=158, Evalue=1e-40,
Organism=Drosophila melanogaster, GI85725234, Length=103, Percent_Identity=35.9223300970874, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24647376, Length=103, Percent_Identity=35.9223300970874, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 16849; Mature: 16718

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVNKVILIGNLGKDPETRYMPNGDAVTNITVATTETWKDKNGEKQEKTEWHRVTFYRK
CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
LAEIAGEYLKKGRSVYVEGRLETRKWTDKSGVERYTTDVIATDMKMLGSKPGGASYEAPE
HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
REEGGFAPSSSGGRAPARSSTGFDDMDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASVNKVILIGNLGKDPETRYMPNGDAVTNITVATTETWKDKNGEKQEKTEWHRVTFYRK
CCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
LAEIAGEYLKKGRSVYVEGRLETRKWTDKSGVERYTTDVIATDMKMLGSKPGGASYEAPE
HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
REEGGFAPSSSGGRAPARSSTGFDDMDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12700255 [H]