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The map label for this gene is yfdV

Identifier: 82544840

GI number: 82544840

Start: 2391174

End: 2392118

Strand: Reverse

Name: yfdV

Synonym: SBO_2398

Alternate gene names: 82544840

Gene position: 2392118-2391174 (Counterclockwise)

Preceding gene: 82544841

Following gene: 82544839

Centisome position: 52.93

GC content: 45.08

Gene sequence:

>945_bases
ATGCTAACATTTTTTATTGGCGATTTATTGCCTATTATCGTAATCATGCTGTTGGGTTATTTTAGCGGCAGACGAGAAAC
TTTTTCAGAAGATCAAGCCCGCGCATTTAATAAACTGGTATTAAACTACGCTCTTCCTGCGGCTCTATTTGTTTCTATTA
CCCGGGCAAACAGGGAAATGATTTTTGCGGACACTCGTCTGACCCTTGTATCACTTGTGGTTATTGTCGGATGTTTCTTT
TTCTCCTGGTTTGGTTGCTACAAATTTTTTAAACGTACCCATGCAGAAGCAGCTGTATGTGCATTAATTGCGGGTTCACC
TACCATTGGATTCCTGGGGTTTGCAGTTCTCGATCCTATTTATGGTGATTCCGTATCAACAGGTTTAGTGGTAGCAATTA
TTTCTATTATTGTTAACGCAATTACTATTCCTATTGGTCTGTATTTGCTGAATCCTTCCTCAGGAGCGGATGGTAAGAAG
AATAGTAATCTGAGCGCATTAATTTCTGCGGCAAAGGAGCCAGTAGTATGGGCACCTGTTCTGGCAACGATCCTGGTGCT
GGTTGGGGTAAAAATTCCGGCAGCATGGGACCCAACCTTTAATCTGATTGCGAAGGCTAACTCAGGGGTAGCGGTATTCG
CTGCGGGGTTGACTCTGGCTGCACATAAATTCGAGTTCAGTGCCGAAATTGCTTATAACACCTTCCTGAAGTTGATTCTG
ATGCCACTGGCGCTGCTTCTCGTTGGTATGGCATGTCATTTGAACAGCGAACATTTGCAGATGATGGTACTGGCAGGCGC
ATTACCGCCGGCGTTCTCCGGAATCATTATTGCCAGCCGGTTTAATGTCTACACCCGTACTGGTACAGCGTCATTGGCTG
TGAGCGTACTGGGCTTTGTCGTCACGGCTCCCTTGTGGATTTATGTCAGTCGACTGGTTTCATAA

Upstream 100 bases:

>100_bases
ACTTAACCCAAAACAAGTCGCTGGTAATTAAATACTGACATCGTCTCCTCTTGCCAACTCATTATGCGATGGTGAGGGGA
CCCTTATCGGAAATACTATT

Downstream 100 bases:

>100_bases
TTAATCATGTTATTGATTTTACATAAATGCCGAAGTGTCTTTTCACCTTCGGCTTTTTTCAAGGCATAAGCAAATGACAA
ATAATGAAAGCAAAGGGCCG

Product: transporter YfdV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFF
FSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK
NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLIL
MPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS

Sequences:

>Translated_314_residues
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFF
FSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK
NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLIL
MPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS
>Mature_314_residues
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFF
FSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK
NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLIL
MPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family

Homologues:

Organism=Escherichia coli, GI1788715, Length=314, Percent_Identity=100, Blast_Score=624, Evalue=1e-180,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFDV_ECO57 (P0AA51)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   D91035
- RefSeq:   NP_288942.1
- RefSeq:   NP_311279.1
- ProteinModelPortal:   P0AA51
- PRIDE:   P0AA51
- EnsemblBacteria:   EBESCT00000025071
- EnsemblBacteria:   EBESCT00000060259
- GeneID:   915647
- GeneID:   958378
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z3635
- KEGG:   ecs:ECs3252
- GeneTree:   EBGT00050000011933
- HOGENOM:   HBG351062
- OMA:   MIATRFE
- ProtClustDB:   PRK09903
- BioCyc:   ECOL83334:ECS3252-MONOMER
- InterPro:   IPR004776

Pfam domain/function: PF03547 Mem_trans

EC number: NA

Molecular weight: Translated: 33616; Mature: 33616

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1a607fe0)-; HASH(0x1a64a300)-; HASH(0x1a356758)-; HASH(0x1ad0c694)-; HASH(0x1a642ec4)-; HASH(0x19448108)-; HASH(0x1a3a8490)-; HASH(0x1ad910d8)-; HASH(0x1abb494c)-; HASH(0x1a182278)-;

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREM
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
IFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
YGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPV
CCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEHHHH
LATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLIL
HHHHHHHHCCCCCCCCCCCHHHEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
MPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFV
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHCCEEEEEECEEEEECCHHHHHHHHHHHH
VTAPLWIYVSRLVS
HHHHHHHHHHHHCH
>Mature Secondary Structure
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREM
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
IFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
YGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPV
CCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEHHHH
LATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLIL
HHHHHHHHCCCCCCCCCCCHHHEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
MPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFV
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHCCEEEEEECEEEEECCHHHHHHHHHHHH
VTAPLWIYVSRLVS
HHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796