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The map label for this gene is yfdE [H]

Identifier: 82544839

GI number: 82544839

Start: 2389955

End: 2391139

Strand: Reverse

Name: yfdE [H]

Synonym: SBO_2397

Alternate gene names: 82544839

Gene position: 2391139-2389955 (Counterclockwise)

Preceding gene: 82544840

Following gene: 82544836

Centisome position: 52.9

GC content: 45.32

Gene sequence:

>1185_bases
GTGTCTTTTCACCTTCGGCTTTTTTCAAGGCATAAGCAAATGACAAATAATGAAAGCAAAGGGCCGTTTGAAGGCTTATT
AGTTATCGATATGACACATGTCCTTAATGGACCTTTCGGAACTCAACTTCTTTGTAATATGGGCGCAAGGGTAATTAAAG
TTGAGCCGCCGGGTCATGGTGATGATACCCGCACATTTGGTCCCTATGTGGATGGACAGTCACTCTATTACAGTTTTATT
AATCATGGCAAAGAGAGTGTGGTTCTTGATTTAAAGAATGATTACGATAAAAGTATATTTATAAATATGCTCAAACAAGC
TGATGTATTAGCTGAGAATTTTCGCCCAGGTACAATGGAAAAACTGGGGTTTTCATGGGAAACGCTTCAAGAAATCAACC
CGCGCCTCATATATGCTTCATCGTCAGGTTTCGGACATACCGGTCCGCTAAAAGATGCTCCTGCCTACGATACCATCATT
CAGGCAATGAGCGGGATAATGATGGAAACAGGATATCCTGATGCTCCGCCAGTGCGCGTTGGTACATCTCTTGCGGATCT
ATGCGGCGGTGTCTATTTATTCAGCGGAATAGTGAGTGCACTTTATGGCCGCGAAAAGAGCCAGAGAGGGGCGCATGTCG
ATATAGCGATGTTTGATGCCACGCTGAGTTTTCTGGAGCATGGTCTGATGGCATATATCGCGACAGGGAAGTCACCACAA
CGTCTGGGAAATCGCCATCCCTACATGGCACCTTTTGATGTTTTCAATACTCAGGATAAGCCGATTACGATTTGTTGTGG
TAATGACAAGCTTTTTTCTGCGTTATGCCAGGCACTGGAGCTTACGGAACTGGTTAATGATCCCCGATTTAGCAGCAATA
TTTTACGCGTACAAAACCAGGCTATTCTTAAACAATATATTGAGCGGACGTTAAAAACGCAGGCAGCTGAAGTTTGGTTA
GCCAGAATACATGAAGTTGGTGTACCCGTCGCGCCGTTATTAAGTGTGGCTGAGGCCATTAAATTGCCACAAACTCAGGC
GAGAAATATGTTGATTGAAGCCGGGGGAATAATGATGCCGGGTAATCCGATAAAAATCAGCGGCTGCGCGGACCCGCATG
TTATGCCGGGAGCGGCAACGCTCGACCAGCATGGGGAACAAATTCGCCAGGAGTTCTCATCATAA

Upstream 100 bases:

>100_bases
GTGAGCGTACTGGGCTTTGTCGTCACGGCTCCCTTGTGGATTTATGTCAGTCGACTGGTTTCATAATTAATCATGTTATT
GATTTTACATAAATGCCGAA

Downstream 100 bases:

>100_bases
ATGTAAGATGTGCTGGTAAATAGCTCCCACATTTGAACATTGTGGGAGCCGCTATTTAGTCATTTTTCTGACAGAAAACA
GCAATCTCCTGGTCCAGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSFHLRLFSRHKQMTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFI
NHGKESVVLDLKNDYDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTII
QAMSGIMMETGYPDAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQ
RLGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKTQAAEVWL
ARIHEVGVPVAPLLSVAEAIKLPQTQARNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS

Sequences:

>Translated_394_residues
MSFHLRLFSRHKQMTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFI
NHGKESVVLDLKNDYDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTII
QAMSGIMMETGYPDAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQ
RLGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKTQAAEVWL
ARIHEVGVPVAPLLSVAEAIKLPQTQARNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS
>Mature_393_residues
SFHLRLFSRHKQMTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFIN
HGKESVVLDLKNDYDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQ
AMSGIMMETGYPDAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQR
LGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKTQAAEVWLA
RIHEVGVPVAPLLSVAEAIKLPQTQARNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=391, Percent_Identity=32.7365728900256, Blast_Score=238, Evalue=5e-63,
Organism=Homo sapiens, GI300863124, Length=339, Percent_Identity=34.2182890855457, Blast_Score=232, Evalue=5e-61,
Organism=Homo sapiens, GI13376042, Length=339, Percent_Identity=30.9734513274336, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI300863126, Length=391, Percent_Identity=29.6675191815857, Blast_Score=189, Evalue=4e-48,
Organism=Homo sapiens, GI266458393, Length=200, Percent_Identity=35, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266458397, Length=200, Percent_Identity=35, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI42794625, Length=200, Percent_Identity=35, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266456254, Length=200, Percent_Identity=35, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=37.7622377622378, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=37.7622377622378, Blast_Score=96, Evalue=8e-20,
Organism=Escherichia coli, GI87082093, Length=381, Percent_Identity=99.737532808399, Blast_Score=792, Evalue=0.0,
Organism=Escherichia coli, GI1788717, Length=401, Percent_Identity=29.925187032419, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1786222, Length=364, Percent_Identity=24.7252747252747, Blast_Score=99, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=211, Percent_Identity=28.436018957346, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115535051, Length=201, Percent_Identity=28.8557213930348, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24648431, Length=333, Percent_Identity=32.1321321321321, Blast_Score=212, Evalue=3e-55,
Organism=Drosophila melanogaster, GI24585488, Length=335, Percent_Identity=28.6567164179104, Blast_Score=102, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43366; Mature: 43235

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFHLRLFSRHKQMTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHG
CCEEHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHCCCCHHHHHHHCCCEEEEECCCCCC
DDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDYDKSIFINMLKQADVLAENFRPGTME
CCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHH
KLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRV
HHCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCHH
GTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQ
CCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEHHHHHHHHHHHHHHHEEEECCCCHH
RLGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQ
HHCCCCCCCCCHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
AILKQYIERTLKTQAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQARNMLIEAGGIMMP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHEEEECCCEEEC
GNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS
CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SFHLRLFSRHKQMTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHG
CEEHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHCCCCHHHHHHHCCCEEEEECCCCCC
DDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDYDKSIFINMLKQADVLAENFRPGTME
CCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHH
KLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRV
HHCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCHH
GTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQ
CCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEHHHHHHHHHHHHHHHEEEECCCCHH
RLGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQ
HHCCCCCCCCCHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
AILKQYIERTLKTQAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQARNMLIEAGGIMMP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHEEEECCCEEEC
GNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS
CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]