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The map label for this gene is yhdX [H]

Identifier: 78779550

GI number: 78779550

Start: 1080980

End: 1081873

Strand: Reverse

Name: yhdX [H]

Synonym: PMT9312_1167

Alternate gene names: 78779550

Gene position: 1081873-1080980 (Counterclockwise)

Preceding gene: 78779551

Following gene: 78779549

Centisome position: 63.3

GC content: 30.65

Gene sequence:

>894_bases
ATGAGTAAAAATAAAAAAATATTTTTTCAGATTCTTTTGGTGTTTGGAGTTCTTGGTTTTTTAGGGATATTAACTAATAA
CTTAATCATTAATCTTACAAGAACTGGCATAGGATTCAATTTTAATTGGTTAACAAAGCCGGCAAGCTTTTCTTTGGCAG
AACATCCCTTGCCCTATAGTCCTTCGGACAGTTATGCTTGGGCCCTTTTTATGGGATGGATGAATAGCTTGAAAGTTATT
ATTTCATCTCTTGTTTTAGCATCTTTTATTGGAACGTTAATAGGTTTTTTGAGAGTAGGTAAAAATTCATTTTTTAGAAT
TATTACTGCTGGATATATCACAGTTATTAGACAGACTCCACTTTTAATTCAACTTATGTGTTGGTATTTTGTTGGATTTC
TAAGTATAAGAAATAATTCTTTTTTGAATTTAAGTAATGTAGTTAATATTTCCAATAAAGGGATAGAGTTATTTGGACTT
AATTTATCTTCAGAGTTTTCAGCATTATTATTTGGTTTAAGCATATTTTCAAGCGCATTTATTGCAGAAGTAATTCGAGG
TGGAATTCAGTCTGTTCCTGTAGGTCAATGGGAAGCTTTTCGAAGTTTAGGTATTTCCGAAAAACAAGGATTTATTAAAA
TAATAATACCTCAAGCATTACCAGCTTTTATTCCAGGACTTACGAGTCAATATCTAAATCTTGCAAAAAATAGCACACTT
GCAATAGCTATAGGCTACGCAGATATATATGCAATAAATGACACGATCATCAACCAAACAGGAAGAGCTGTAGAGTGCTT
TATGATTTTGCTTTGCAGTTTTTTAATCCTTAATTTAGTAATAACAAAAGTAATGGGGATCATTGATAAATCAATAATGA
AAACAAGGATATAA

Upstream 100 bases:

>100_bases
GATAGCGATGTACCTATTCCAAGAGGATTGAATGAAATTTACAGTAAAGGTGGTTTACATATCTCTCCACCATTTAATTG
ATTGCAAAATATATTGAGGA

Downstream 100 bases:

>100_bases
CTTATTAATGAATAATATAAATCCAAATTTAAATACAAATTTATTTAAAAAAATTAAAAATTCTTTATTAGCAAAATCAA
AATATAATTTCTGCAATTTT

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSKNKKIFFQILLVFGVLGFLGILTNNLIINLTRTGIGFNFNWLTKPASFSLAEHPLPYSPSDSYAWALFMGWMNSLKVI
ISSLVLASFIGTLIGFLRVGKNSFFRIITAGYITVIRQTPLLIQLMCWYFVGFLSIRNNSFLNLSNVVNISNKGIELFGL
NLSSEFSALLFGLSIFSSAFIAEVIRGGIQSVPVGQWEAFRSLGISEKQGFIKIIIPQALPAFIPGLTSQYLNLAKNSTL
AIAIGYADIYAINDTIINQTGRAVECFMILLCSFLILNLVITKVMGIIDKSIMKTRI

Sequences:

>Translated_297_residues
MSKNKKIFFQILLVFGVLGFLGILTNNLIINLTRTGIGFNFNWLTKPASFSLAEHPLPYSPSDSYAWALFMGWMNSLKVI
ISSLVLASFIGTLIGFLRVGKNSFFRIITAGYITVIRQTPLLIQLMCWYFVGFLSIRNNSFLNLSNVVNISNKGIELFGL
NLSSEFSALLFGLSIFSSAFIAEVIRGGIQSVPVGQWEAFRSLGISEKQGFIKIIIPQALPAFIPGLTSQYLNLAKNSTL
AIAIGYADIYAINDTIINQTGRAVECFMILLCSFLILNLVITKVMGIIDKSIMKTRI
>Mature_296_residues
SKNKKIFFQILLVFGVLGFLGILTNNLIINLTRTGIGFNFNWLTKPASFSLAEHPLPYSPSDSYAWALFMGWMNSLKVII
SSLVLASFIGTLIGFLRVGKNSFFRIITAGYITVIRQTPLLIQLMCWYFVGFLSIRNNSFLNLSNVVNISNKGIELFGLN
LSSEFSALLFGLSIFSSAFIAEVIRGGIQSVPVGQWEAFRSLGISEKQGFIKIIIPQALPAFIPGLTSQYLNLAKNSTLA
IAIGYADIYAINDTIINQTGRAVECFMILLCSFLILNLVITKVMGIIDKSIMKTRI

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=135, Percent_Identity=49.6296296296296, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786874, Length=235, Percent_Identity=25.531914893617, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1786873, Length=217, Percent_Identity=30.4147465437788, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788226, Length=198, Percent_Identity=29.7979797979798, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787087, Length=200, Percent_Identity=25.5, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87082239, Length=84, Percent_Identity=45.2380952380952, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787030, Length=206, Percent_Identity=27.6699029126214, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788645, Length=243, Percent_Identity=24.2798353909465, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32867; Mature: 32735

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNKKIFFQILLVFGVLGFLGILTNNLIINLTRTGIGFNFNWLTKPASFSLAEHPLPYS
CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEECCCCCCCCHHCCCCCCC
PSDSYAWALFMGWMNSLKVIISSLVLASFIGTLIGFLRVGKNSFFRIITAGYITVIRQTP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCH
LLIQLMCWYFVGFLSIRNNSFLNLSNVVNISNKGIELFGLNLSSEFSALLFGLSIFSSAF
HHHHHHHHHHHHHHHHCCCCCEEHHHEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHH
IAEVIRGGIQSVPVGQWEAFRSLGISEKQGFIKIIIPQALPAFIPGLTSQYLNLAKNSTL
HHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECHHHHHHHCCHHHHHHHHHCCCEE
AIAIGYADIYAINDTIINQTGRAVECFMILLCSFLILNLVITKVMGIIDKSIMKTRI
EEEEECHHEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKNKKIFFQILLVFGVLGFLGILTNNLIINLTRTGIGFNFNWLTKPASFSLAEHPLPYS
CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEECCCCCCCCHHCCCCCCC
PSDSYAWALFMGWMNSLKVIISSLVLASFIGTLIGFLRVGKNSFFRIITAGYITVIRQTP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCH
LLIQLMCWYFVGFLSIRNNSFLNLSNVVNISNKGIELFGLNLSSEFSALLFGLSIFSSAF
HHHHHHHHHHHHHHHHCCCCCEEHHHEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHH
IAEVIRGGIQSVPVGQWEAFRSLGISEKQGFIKIIIPQALPAFIPGLTSQYLNLAKNSTL
HHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECHHHHHHHCCHHHHHHHHHCCCEE
AIAIGYADIYAINDTIINQTGRAVECFMILLCSFLILNLVITKVMGIIDKSIMKTRI
EEEEECHHEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]