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The map label for this gene is yhdY [H]

Identifier: 78779549

GI number: 78779549

Start: 1079941

End: 1080972

Strand: Reverse

Name: yhdY [H]

Synonym: PMT9312_1166

Alternate gene names: 78779549

Gene position: 1080972-1079941 (Counterclockwise)

Preceding gene: 78779550

Following gene: 78779548

Centisome position: 63.24

GC content: 28.88

Gene sequence:

>1032_bases
ATGAATAATATAAATCCAAATTTAAATACAAATTTATTTAAAAAAATTAAAAATTCTTTATTAGCAAAATCAAAATATAA
TTTCTGCAATTTTATATTTTTTCTGATTTCAATTTCATTAATTTTAAAAATTTTAACTTCGATTTTTATAAATTCAAATT
GGGAAGTCGTAACATCAAATCTTAATTTATATGCATTTGGGAGCTTTCCAATCGATCAGCAATGGAGACCTACTCTTTGG
TTCTTCAGTCTTTTATCTATTACATTTATTACAGTTTATGGGCCTAAATGGAAATGGCTTCGTAAAAATTTAATTTTTGG
ATGGATTGGAACAGTACCATTAGGAATTTATTTGCTAAGTGGTGGTTTGGGTTTAAATCCAGTAATGACACGTCATTGGG
GTGGATTAACCCTAACAATTCTTATAACTTCTTGTAGTATTCTTTTTTCTTTACCAATTGGTATTTTATTAGCTCTTTGC
AGAAGAAGTTCAATATTTTTAATTCAGAAATCAAGTTCTCTTTATATTGATGTAATGAGAGCTGTTCCTCTTATTTCTGT
ACTTTTTTTTGGACAATTGTTAATACCTTTATTTCTACCTGTAGGTTTAGAAATAGATCGTGTCTGGAGGGCTGTAATAG
CTTTTACTTTTTTTGTCTCAGCATATATAGCTGAAGATATTAAAGGAGGATTACAGTCGATACCTAAAAATCAAATAGAA
GCTGCTAAAAGTCTTGGCTTAAACAAATATCAAATCAATATATACATTCTTATTCCACAAGCCTTAAGAGTTGCATTGCC
GGCTATTACAAACCAGTTAATTGGGCTTTTTCAAAATACATCTTTAATGGCTATCTTAGGTTTGATGGAATTACTTGGTG
TAAGCAGGAGTATTCTTGCTAATCCAGAATTCATAGGACAATATATTGAAGTATATATTTGGTTGGCTTCCGTCTATTGG
CTTTTTTGCACAATTATGGCATTTGTTTCAAAAAAACTTGAGCAAAAAATGACAATTAATAAAGGATATTAA

Upstream 100 bases:

>100_bases
ATGATTTTGCTTTGCAGTTTTTTAATCCTTAATTTAGTAATAACAAAAGTAATGGGGATCATTGATAAATCAATAATGAA
AACAAGGATATAACTTATTA

Downstream 100 bases:

>100_bases
TCTTACATCTATGAAGCCAATACTTACCGCTAAAAATCTCACCAAATCATATGCTAAAGGTATTCTTGCTCTTAATAAAG
TTTCATTTACCTTAGATCAA

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MNNINPNLNTNLFKKIKNSLLAKSKYNFCNFIFFLISISLILKILTSIFINSNWEVVTSNLNLYAFGSFPIDQQWRPTLW
FFSLLSITFITVYGPKWKWLRKNLIFGWIGTVPLGIYLLSGGLGLNPVMTRHWGGLTLTILITSCSILFSLPIGILLALC
RRSSIFLIQKSSSLYIDVMRAVPLISVLFFGQLLIPLFLPVGLEIDRVWRAVIAFTFFVSAYIAEDIKGGLQSIPKNQIE
AAKSLGLNKYQINIYILIPQALRVALPAITNQLIGLFQNTSLMAILGLMELLGVSRSILANPEFIGQYIEVYIWLASVYW
LFCTIMAFVSKKLEQKMTINKGY

Sequences:

>Translated_343_residues
MNNINPNLNTNLFKKIKNSLLAKSKYNFCNFIFFLISISLILKILTSIFINSNWEVVTSNLNLYAFGSFPIDQQWRPTLW
FFSLLSITFITVYGPKWKWLRKNLIFGWIGTVPLGIYLLSGGLGLNPVMTRHWGGLTLTILITSCSILFSLPIGILLALC
RRSSIFLIQKSSSLYIDVMRAVPLISVLFFGQLLIPLFLPVGLEIDRVWRAVIAFTFFVSAYIAEDIKGGLQSIPKNQIE
AAKSLGLNKYQINIYILIPQALRVALPAITNQLIGLFQNTSLMAILGLMELLGVSRSILANPEFIGQYIEVYIWLASVYW
LFCTIMAFVSKKLEQKMTINKGY
>Mature_343_residues
MNNINPNLNTNLFKKIKNSLLAKSKYNFCNFIFFLISISLILKILTSIFINSNWEVVTSNLNLYAFGSFPIDQQWRPTLW
FFSLLSITFITVYGPKWKWLRKNLIFGWIGTVPLGIYLLSGGLGLNPVMTRHWGGLTLTILITSCSILFSLPIGILLALC
RRSSIFLIQKSSSLYIDVMRAVPLISVLFFGQLLIPLFLPVGLEIDRVWRAVIAFTFFVSAYIAEDIKGGLQSIPKNQIE
AAKSLGLNKYQINIYILIPQALRVALPAITNQLIGLFQNTSLMAILGLMELLGVSRSILANPEFIGQYIEVYIWLASVYW
LFCTIMAFVSKKLEQKMTINKGY

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=353, Percent_Identity=35.6940509915014, Blast_Score=201, Evalue=6e-53,
Organism=Escherichia coli, GI1788226, Length=206, Percent_Identity=32.0388349514563, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1786873, Length=236, Percent_Identity=30.9322033898305, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1787030, Length=207, Percent_Identity=30.4347826086957, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786874, Length=235, Percent_Identity=24.6808510638298, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI48994930, Length=127, Percent_Identity=33.0708661417323, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788645, Length=171, Percent_Identity=29.8245614035088, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787087, Length=222, Percent_Identity=23.4234234234234, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788646, Length=171, Percent_Identity=28.6549707602339, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38846; Mature: 38846

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNINPNLNTNLFKKIKNSLLAKSKYNFCNFIFFLISISLILKILTSIFINSNWEVVTSN
CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
LNLYAFGSFPIDQQWRPTLWFFSLLSITFITVYGPKWKWLRKNLIFGWIGTVPLGIYLLS
CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHC
GGLGLNPVMTRHWGGLTLTILITSCSILFSLPIGILLALCRRSSIFLIQKSSSLYIDVMR
CCCCCCCHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
AVPLISVLFFGQLLIPLFLPVGLEIDRVWRAVIAFTFFVSAYIAEDIKGGLQSIPKNQIE
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AAKSLGLNKYQINIYILIPQALRVALPAITNQLIGLFQNTSLMAILGLMELLGVSRSILA
HHHHCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHC
NPEFIGQYIEVYIWLASVYWLFCTIMAFVSKKLEQKMTINKGY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNNINPNLNTNLFKKIKNSLLAKSKYNFCNFIFFLISISLILKILTSIFINSNWEVVTSN
CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
LNLYAFGSFPIDQQWRPTLWFFSLLSITFITVYGPKWKWLRKNLIFGWIGTVPLGIYLLS
CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHC
GGLGLNPVMTRHWGGLTLTILITSCSILFSLPIGILLALCRRSSIFLIQKSSSLYIDVMR
CCCCCCCHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
AVPLISVLFFGQLLIPLFLPVGLEIDRVWRAVIAFTFFVSAYIAEDIKGGLQSIPKNQIE
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AAKSLGLNKYQINIYILIPQALRVALPAITNQLIGLFQNTSLMAILGLMELLGVSRSILA
HHHHCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHC
NPEFIGQYIEVYIWLASVYWLFCTIMAFVSKKLEQKMTINKGY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]