Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 78779183

GI number: 78779183

Start: 744077

End: 744538

Strand: Reverse

Name: yqgF [C]

Synonym: PMT9312_0799

Alternate gene names: 78779183

Gene position: 744538-744077 (Counterclockwise)

Preceding gene: 78779184

Following gene: 78779182

Centisome position: 43.56

GC content: 31.6

Gene sequence:

>462_bases
GTGAAATTTTATAAACCTAAACCCAGGTCAATTTTAAGCTTCGATGTAGGAATCAAAAGAATAGGATTGGCTTATTGTGA
TCCACTATGCATAACATCAAATATACTCCCAGCAGTAAAGAGGGTTGAAGATAATAAAGAGCTTAAAATCATTAGAAATC
ATATAAAAAAATTTAATTTGACTGGTTTTATTGTTGGGCTTCCGCTTGATGAGAAAGGTAAAATGACCCCTCAGGCTATT
GACTGTATGAATTACGGTCAATTACTTTCAAATGAATTAAAGCTTCCATTTTCTTACGTCAACGAACATAGTTCAACATG
GGAATCTTCAAATAGATTTGGAATTAAAAAAGATAAATCTGGATTGATTGATAGTTTTGCAGCAAAAGTAATACTTGAAC
AATGGATAAAAGAAGGTCCTGAATTAGAAGAATTAGCTGGTAAAGGTCAGATAAAATATTAG

Upstream 100 bases:

>100_bases
CAAAACAAGTAAATAAAATAAATCAATCTTTGGAATCAATCTTTGACAAATTAAGTCCACAAAATAATCCATATCCATCT
CCTTTGCCATTAAAGTCAAA

Downstream 100 bases:

>100_bases
TATTAAAAAGAATTAGATAATTTTTAAATGAAAGAAACTAACTCAAATGATAATCATGAGGCTCAGACACTAATATTAAA
TGACTCAAATGGAAACGAGA

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MKFYKPKPRSILSFDVGIKRIGLAYCDPLCITSNILPAVKRVEDNKELKIIRNHIKKFNLTGFIVGLPLDEKGKMTPQAI
DCMNYGQLLSNELKLPFSYVNEHSSTWESSNRFGIKKDKSGLIDSFAAKVILEQWIKEGPELEELAGKGQIKY

Sequences:

>Translated_153_residues
MKFYKPKPRSILSFDVGIKRIGLAYCDPLCITSNILPAVKRVEDNKELKIIRNHIKKFNLTGFIVGLPLDEKGKMTPQAI
DCMNYGQLLSNELKLPFSYVNEHSSTWESSNRFGIKKDKSGLIDSFAAKVILEQWIKEGPELEELAGKGQIKY
>Mature_153_residues
MKFYKPKPRSILSFDVGIKRIGLAYCDPLCITSNILPAVKRVEDNKELKIIRNHIKKFNLTGFIVGLPLDEKGKMTPQAI
DCMNYGQLLSNELKLPFSYVNEHSSTWESSNRFGIKKDKSGLIDSFAAKVILEQWIKEGPELEELAGKGQIKY

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_PROM9 (Q31B86)

Other databases:

- EMBL:   CP000111
- RefSeq:   YP_397295.1
- ProteinModelPortal:   Q31B86
- SMR:   Q31B86
- STRING:   Q31B86
- GeneID:   3765599
- GenomeReviews:   CP000111_GR
- KEGG:   pmi:PMT9312_0799
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   NEHSSTW
- ProtClustDB:   CLSK919441
- BioCyc:   PMAR74546:PMT9312_0799-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17378; Mature: 17378

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFYKPKPRSILSFDVGIKRIGLAYCDPLCITSNILPAVKRVEDNKELKIIRNHIKKFNL
CCCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
TGFIVGLPLDEKGKMTPQAIDCMNYGQLLSNELKLPFSYVNEHSSTWESSNRFGIKKDKS
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCH
GLIDSFAAKVILEQWIKEGPELEELAGKGQIKY
HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MKFYKPKPRSILSFDVGIKRIGLAYCDPLCITSNILPAVKRVEDNKELKIIRNHIKKFNL
CCCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
TGFIVGLPLDEKGKMTPQAIDCMNYGQLLSNELKLPFSYVNEHSSTWESSNRFGIKKDKS
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCH
GLIDSFAAKVILEQWIKEGPELEELAGKGQIKY
HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA