Click here to switch to the map view.

The map label for this gene is ligA [H]

Identifier: 78779078

GI number: 78779078

Start: 652995

End: 653744

Strand: Reverse

Name: ligA [H]

Synonym: PMT9312_0694

Alternate gene names: 78779078

Gene position: 653744-652995 (Counterclockwise)

Preceding gene: 78779079

Following gene: 78779076

Centisome position: 38.25

GC content: 33.47

Gene sequence:

>750_bases
ATGAAGACTTATTTCGAAGAACGAATTGAATGGTATGACGATAATTACAGAAATGGTAATGCTTTAATTTCTGATAAGCA
GTTCGACCAACTTGAAAAGAATTTATTAAGAACAAATCCTAATTGTGATTACTTTAAGAAAAGAAGTAAGTTAGTTTTAC
CTTCATTAGAGAAGGATTCAATAGATAGATTTTTGGAAGGATTATTAGCAGATACGAGATTATTAATTGAGCCTAAAATT
GATGGTTGTGCTGTTGCTTTGCAATATAGGGATGGAATCTTGGAGAAAGCAATTTCAAGAAAGGGGACTGACGTCACTAC
TAAACTTATAAAAGTTCAAGACATTCCCAATCATCTTCCTTTGCGAGGAGTTCTTCAAGTTAGAGGCGAACTATACGCAT
CTAACCAAACTCCAAATATCTCCCAAAGAATGGCTTCAGGATATCTCAGAGCAAAAGAAGGATTTCCTGAAAGACTTAGC
TTCTGCGCATTTCAAATACTTAATTCAACACTTAACCAATATGAATCCAAAAAGAGTCTTTCCGAGCTTGGCTTCACGAT
CCCTCAGGATATTTCATGCAACTTTACGAGCCAAGTTCAAGTATTCAGAAAACAGTGGATAGAAGGGAAACTTTTTAGGG
AATATCCAACAGATGGAATAGTAGTAAAGATAAATTCTAGAAAATTACAATTAATTAGAGAAAAATCAAATTTAGATTAT
CCTTATTGGCAAGTTGCAATAAAAAGTTAA

Upstream 100 bases:

>100_bases
TTCATTTCTTTTATGGACTGTTAAATATGAAGATAGAGATAAATGGATTATAGATAAACCAAATTCGATACCTAGCCCAA
AACTTAAGAAATCGTATTAA

Downstream 100 bases:

>100_bases
TGGAATTAGTACATCAGATTTTTCCTACTTGGCATATTTACTTAGATATGTTTTTGGTTGGCTTTGCAACATACGGTTTT
CTAAGAATTAAGAAAAAAAT

Product: NAD-dependent DNA ligase

Products: NA

Alternate protein names: Polydeoxyribonucleotide synthase [NAD+] [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKTYFEERIEWYDDNYRNGNALISDKQFDQLEKNLLRTNPNCDYFKKRSKLVLPSLEKDSIDRFLEGLLADTRLLIEPKI
DGCAVALQYRDGILEKAISRKGTDVTTKLIKVQDIPNHLPLRGVLQVRGELYASNQTPNISQRMASGYLRAKEGFPERLS
FCAFQILNSTLNQYESKKSLSELGFTIPQDISCNFTSQVQVFRKQWIEGKLFREYPTDGIVVKINSRKLQLIREKSNLDY
PYWQVAIKS

Sequences:

>Translated_249_residues
MKTYFEERIEWYDDNYRNGNALISDKQFDQLEKNLLRTNPNCDYFKKRSKLVLPSLEKDSIDRFLEGLLADTRLLIEPKI
DGCAVALQYRDGILEKAISRKGTDVTTKLIKVQDIPNHLPLRGVLQVRGELYASNQTPNISQRMASGYLRAKEGFPERLS
FCAFQILNSTLNQYESKKSLSELGFTIPQDISCNFTSQVQVFRKQWIEGKLFREYPTDGIVVKINSRKLQLIREKSNLDY
PYWQVAIKS
>Mature_249_residues
MKTYFEERIEWYDDNYRNGNALISDKQFDQLEKNLLRTNPNCDYFKKRSKLVLPSLEKDSIDRFLEGLLADTRLLIEPKI
DGCAVALQYRDGILEKAISRKGTDVTTKLIKVQDIPNHLPLRGVLQVRGELYASNQTPNISQRMASGYLRAKEGFPERLS
FCAFQILNSTLNQYESKKSLSELGFTIPQDISCNFTSQVQVFRKQWIEGKLFREYPTDGIVVKINSRKLQLIREKSNLDY
PYWQVAIKS

Specific function: DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of dam

COG id: COG0272

COG function: function code L; NAD-dependent DNA ligase (contains BRCT domain type II)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD-dependent DNA ligase family. LigA subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001357
- InterPro:   IPR004150
- InterPro:   IPR001679
- InterPro:   IPR013839
- InterPro:   IPR013840
- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR010994 [H]

Pfam domain/function: PF00533 BRCT; PF01653 DNA_ligase_aden; PF03120 DNA_ligase_OB [H]

EC number: =6.5.1.2 [H]

Molecular weight: Translated: 28916; Mature: 28916

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTYFEERIEWYDDNYRNGNALISDKQFDQLEKNLLRTNPNCDYFKKRSKLVLPSLEKDS
CCCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHCCCCCHHHHHCCCEECCCCCHHH
IDRFLEGLLADTRLLIEPKIDGCAVALQYRDGILEKAISRKGTDVTTKLIKVQDIPNHLP
HHHHHHHHHHCCEEEEECCCCCEEEEEHHHHHHHHHHHHCCCCCHHHHEEEEECCCCCCC
LRGVLQVRGELYASNQTPNISQRMASGYLRAKEGFPERLSFCAFQILNSTLNQYESKKSL
HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SELGFTIPQDISCNFTSQVQVFRKQWIEGKLFREYPTDGIVVKINSRKLQLIREKSNLDY
HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCCEEHHHHHCCCCC
PYWQVAIKS
CEEEEEECC
>Mature Secondary Structure
MKTYFEERIEWYDDNYRNGNALISDKQFDQLEKNLLRTNPNCDYFKKRSKLVLPSLEKDS
CCCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHCCCCCHHHHHCCCEECCCCCHHH
IDRFLEGLLADTRLLIEPKIDGCAVALQYRDGILEKAISRKGTDVTTKLIKVQDIPNHLP
HHHHHHHHHHCCEEEEECCCCCEEEEEHHHHHHHHHHHHCCCCCHHHHEEEEECCCCCCC
LRGVLQVRGELYASNQTPNISQRMASGYLRAKEGFPERLSFCAFQILNSTLNQYESKKSL
HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SELGFTIPQDISCNFTSQVQVFRKQWIEGKLFREYPTDGIVVKINSRKLQLIREKSNLDY
HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCCEEHHHHHCCCCC
PYWQVAIKS
CEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA