Click here to switch to the map view.

The map label for this gene is ctpA [H]

Identifier: 78779062

GI number: 78779062

Start: 638572

End: 639906

Strand: Direct

Name: ctpA [H]

Synonym: PMT9312_0677

Alternate gene names: 78779062

Gene position: 638572-639906 (Clockwise)

Preceding gene: 78779061

Following gene: 78779064

Centisome position: 37.36

GC content: 30.04

Gene sequence:

>1335_bases
TTGAAGATAAGAAAATTGCTTAAAAAAAATTTTATAATTCTGTTTGCGACAACCTTTTCTGGGCTATTTTTAAATAATTT
TGCAGAAGCAACAGTTCTAAATAATAGTTATAAAGAAGTAATTGATCATGTTTGGCAAATTGTATATAGAGATTTTCTTG
ATTCAAGCGGTAAATTTCAAAAGTCTAATTGGATTAATCTAAGAAAAGAAGTTTTATCAAAAACATATTCAGACAGCAAT
GAAGCATATGATGCGATTAGAGATATGCTTTCTAATTTAGATGATTCTTATACAAGATTTTTAGAACCTAAGGAATTTAA
CCAAATGAGAATTGATACCTCTGGTGAATTAACTGGAGTTGGTATCCAAATAGTTAAAGATAAAGAATCTGATGATTTAA
TAATTATTTCTCCCATAGAGGGTACCCCTGCATTTGATGCTGGAATTAAAGCTAGAGATAAAATATTATCTATAGATGAT
ATTTCTACTGAAGGTATGAATATTGAGGAAGCCGTGAAATTAATAAGAGGACAAAGAGGTACTAAAGTAAAGCTTGAAAT
TCTTAGAGGTTCTAAATCCTTTTTTAAGATTTTATCAAGAGAAAGAATTGAAATAAAAACTGTATCAACTAAAGTCAATC
AAGCCAAAAACGGCTTATTAATTGGCTATGTAAGAATTAAACAATTTAATGCAAATGCATCAAAAGAAACTAGAGATGCT
ATTAAGGATTTAGAAACAAAAAAAGTCGCAGGATATGTTCTTGATTTGAGAAGTAATCCAGGAGGTTTATTAGAATCAAG
CATTGAGATCTCAAGGCACTTCATTAACAAAGGAGTAATAGTAAGTACAGTAAGTAAAGATGGTTTAAAAGAGACAAAAA
GAGGAAACGGTCAAGCTCTAACAAAAAAGCCCTTGGTTGTCTTAGTTAATGAGGGTTCTGCTAGCGCTAGTGAAATAGTC
TCTGGTGCAATAAAAGATAACAAAAGAGGAAAATTAGTTGGGAAGAAAACGTTTGGTAAAGGTCTAGTTCAATCTATGAG
AACATTAGTTGATGGTTCAGGTCTAACTGTTACAGTCGCTAAGTATTTAACTCCGAACGGAACTGACATAAACGAATCTG
GAATTATTCCAGACATAGAAGTGAAAATGAATATAAACCCTATTCTCCAAAGAGAGATTGGAACTAGAAAAGATAAACAA
TATAGAGCTGGTGAAAAAGAGCTAGTAAATATAATTAAAAGAAATAATAATATAAGTGAATTTAATCCAAACACTGCAAA
CCTTAATGCACTCCTAAAAATTAATAAGGAAAATAAAGTATTTTCATTAAATTAA

Upstream 100 bases:

>100_bases
AACTTATTAAGGATGATGGGAAGTGGATTGATCCTTAAGGATTTGTCAAATTTATGAATTATAAATAAATTTTTTTTATA
ATAAAAAAATATATAATTCT

Downstream 100 bases:

>100_bases
TTACTCATATCCAACATTCTCTTTATCGGTACATAGGCTCTTCTTAGTATTTCTGGGTCAAGTTCGATAGACGGGGAATT
ATTTTTCAAACAATCAAGAA

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MKIRKLLKKNFIILFATTFSGLFLNNFAEATVLNNSYKEVIDHVWQIVYRDFLDSSGKFQKSNWINLRKEVLSKTYSDSN
EAYDAIRDMLSNLDDSYTRFLEPKEFNQMRIDTSGELTGVGIQIVKDKESDDLIIISPIEGTPAFDAGIKARDKILSIDD
ISTEGMNIEEAVKLIRGQRGTKVKLEILRGSKSFFKILSRERIEIKTVSTKVNQAKNGLLIGYVRIKQFNANASKETRDA
IKDLETKKVAGYVLDLRSNPGGLLESSIEISRHFINKGVIVSTVSKDGLKETKRGNGQALTKKPLVVLVNEGSASASEIV
SGAIKDNKRGKLVGKKTFGKGLVQSMRTLVDGSGLTVTVAKYLTPNGTDINESGIIPDIEVKMNINPILQREIGTRKDKQ
YRAGEKELVNIIKRNNNISEFNPNTANLNALLKINKENKVFSLN

Sequences:

>Translated_444_residues
MKIRKLLKKNFIILFATTFSGLFLNNFAEATVLNNSYKEVIDHVWQIVYRDFLDSSGKFQKSNWINLRKEVLSKTYSDSN
EAYDAIRDMLSNLDDSYTRFLEPKEFNQMRIDTSGELTGVGIQIVKDKESDDLIIISPIEGTPAFDAGIKARDKILSIDD
ISTEGMNIEEAVKLIRGQRGTKVKLEILRGSKSFFKILSRERIEIKTVSTKVNQAKNGLLIGYVRIKQFNANASKETRDA
IKDLETKKVAGYVLDLRSNPGGLLESSIEISRHFINKGVIVSTVSKDGLKETKRGNGQALTKKPLVVLVNEGSASASEIV
SGAIKDNKRGKLVGKKTFGKGLVQSMRTLVDGSGLTVTVAKYLTPNGTDINESGIIPDIEVKMNINPILQREIGTRKDKQ
YRAGEKELVNIIKRNNNISEFNPNTANLNALLKINKENKVFSLN
>Mature_444_residues
MKIRKLLKKNFIILFATTFSGLFLNNFAEATVLNNSYKEVIDHVWQIVYRDFLDSSGKFQKSNWINLRKEVLSKTYSDSN
EAYDAIRDMLSNLDDSYTRFLEPKEFNQMRIDTSGELTGVGIQIVKDKESDDLIIISPIEGTPAFDAGIKARDKILSIDD
ISTEGMNIEEAVKLIRGQRGTKVKLEILRGSKSFFKILSRERIEIKTVSTKVNQAKNGLLIGYVRIKQFNANASKETRDA
IKDLETKKVAGYVLDLRSNPGGLLESSIEISRHFINKGVIVSTVSKDGLKETKRGNGQALTKKPLVVLVNEGSASASEIV
SGAIKDNKRGKLVGKKTFGKGLVQSMRTLVDGSGLTVTVAKYLTPNGTDINESGIIPDIEVKMNINPILQREIGTRKDKQ
YRAGEKELVNIIKRNNNISEFNPNTANLNALLKINKENKVFSLN

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=310, Percent_Identity=33.5483870967742, Blast_Score=140, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 49525; Mature: 49525

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRKLLKKNFIILFATTFSGLFLNNFAEATVLNNSYKEVIDHVWQIVYRDFLDSSGKFQ
CCHHHHHHCCEEEEEECCHHHHHHHCCHHHHEECCHHHHHHHHHHHHHHHHHHCCCCCCC
KSNWINLRKEVLSKTYSDSNEAYDAIRDMLSNLDDSYTRFLEPKEFNQMRIDTSGELTGV
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEECCCCCEEEE
GIQIVKDKESDDLIIISPIEGTPAFDAGIKARDKILSIDDISTEGMNIEEAVKLIRGQRG
EEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHCEEEECCCCCCCCCHHHHHHHHHCCCC
TKVKLEILRGSKSFFKILSRERIEIKTVSTKVNQAKNGLLIGYVRIKQFNANASKETRDA
CEEEEEEECCCHHHHHHHHCCCEEEEEEHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHH
IKDLETKKVAGYVLDLRSNPGGLLESSIEISRHFINKGVIVSTVSKDGLKETKRGNGQAL
HHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCEE
TKKPLVVLVNEGSASASEIVSGAIKDNKRGKLVGKKTFGKGLVQSMRTLVDGSGLTVTVA
ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEE
KYLTPNGTDINESGIIPDIEVKMNINPILQREIGTRKDKQYRAGEKELVNIIKRNNNISE
EEECCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCHHHCCCHHHHHHHHHCCCCCCC
FNPNTANLNALLKINKENKVFSLN
CCCCCCCEEEEEEECCCCCEEECC
>Mature Secondary Structure
MKIRKLLKKNFIILFATTFSGLFLNNFAEATVLNNSYKEVIDHVWQIVYRDFLDSSGKFQ
CCHHHHHHCCEEEEEECCHHHHHHHCCHHHHEECCHHHHHHHHHHHHHHHHHHCCCCCCC
KSNWINLRKEVLSKTYSDSNEAYDAIRDMLSNLDDSYTRFLEPKEFNQMRIDTSGELTGV
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEECCCCCEEEE
GIQIVKDKESDDLIIISPIEGTPAFDAGIKARDKILSIDDISTEGMNIEEAVKLIRGQRG
EEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHCEEEECCCCCCCCCHHHHHHHHHCCCC
TKVKLEILRGSKSFFKILSRERIEIKTVSTKVNQAKNGLLIGYVRIKQFNANASKETRDA
CEEEEEEECCCHHHHHHHHCCCEEEEEEHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHH
IKDLETKKVAGYVLDLRSNPGGLLESSIEISRHFINKGVIVSTVSKDGLKETKRGNGQAL
HHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCEE
TKKPLVVLVNEGSASASEIVSGAIKDNKRGKLVGKKTFGKGLVQSMRTLVDGSGLTVTVA
ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEE
KYLTPNGTDINESGIIPDIEVKMNINPILQREIGTRKDKQYRAGEKELVNIIKRNNNISE
EEECCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCHHHCCCHHHHHHHHHCCCCCCC
FNPNTANLNALLKINKENKVFSLN
CCCCCCCEEEEEEECCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]