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The map label for this gene is 78779006

Identifier: 78779006

GI number: 78779006

Start: 587244

End: 588023

Strand: Direct

Name: 78779006

Synonym: PMT9312_0621

Alternate gene names: NA

Gene position: 587244-588023 (Clockwise)

Preceding gene: 78779004

Following gene: 78779008

Centisome position: 34.36

GC content: 30.77

Gene sequence:

>780_bases
ATGGAACTATTTAATAAAAAAGGATTAAATCAATTGGATTTTCTTCAGGATCAAATTACAAGTAAAGCCTCTGAAATAGT
TGTTACTAATCAAAATAAAAAAATAGAAAAAATTTTAATTCTTGATACTGAAACAACAGGTTTAGATGAAAATAAAGATG
AAGTGATAGAGATAGGTTGTATTTTGTTTGACGTATCTTTTAAATGTGTACTTTCACAGGTCTCATTTTTATTGCCGGTT
AACAACAATGAAGCCGAACATGTTAATTGTATATCTGCAGAAGTAACTAATATCTCTCAACCTTGGGAAGATGGATTAAA
TTTCTTTTTAAAACTTGTTGATTGTTCTGATTTCATTGTTGCGCATAATGTAGAGTTTGATAAGAAATGGTTTGGGAAAG
GAAGATTGCCTATGCTTAATAAAAAATGGATATGCAGTTTAGATGATATTAATTGGTCTTTTCAAAAATCACTAAAAACA
AGACCTTCAGTAACTGATCTAGCCCTATCTTTTTCAATACCAGTTTGGAATTTACATAGAGCTTTGTCTGATTGCTTTTA
CATTTCTGAGGTCTTCAAAAAATGCGATAATTTAGAGGAACTTTTACTTAAAGCTACTGAACCGAGGTTTTTATACAAGG
CCTTGGTTAGTTATGAAGATAGGTCTTTAGCTAAAAATGCTGGGTTCAGATGGAATAGTCCTGTGCAAGGAGCATGGTCA
AGAAAATTAACTACTGATGAGGCAAAAAATCTTGATTTTAGAGTAGAGATTCTGAATTAA

Upstream 100 bases:

>100_bases
GGTTTTAAAAATTATTTTTAATCGAATTAGTTTAATAAATATTAATTTAAAAGAAATTTTTATTAAATGCGTCAAGATAA
ACGAAAGTGTTTTCAGCTGA

Downstream 100 bases:

>100_bases
AATTTAATGAATTTCTGACTAAGAAAATATTTAGTGCATCTTACAGGGCATCCATTTATTACCCATTTTATGTGCTCCAA
TACATCCGTATTTTGAGGCA

Product: putative DNA polymerase III, epsilon subunit

Products: diphosphate; DNAn+1

Alternate protein names: Exonuclease; DNA Polymerase III Subunit Epsilon; Exonuclease RNAse T And DNA Polymerase III; Exonuclease RNAse T/DNA Polymerase III; Exonuclease Family

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MELFNKKGLNQLDFLQDQITSKASEIVVTNQNKKIEKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLLPV
NNNEAEHVNCISAEVTNISQPWEDGLNFFLKLVDCSDFIVAHNVEFDKKWFGKGRLPMLNKKWICSLDDINWSFQKSLKT
RPSVTDLALSFSIPVWNLHRALSDCFYISEVFKKCDNLEELLLKATEPRFLYKALVSYEDRSLAKNAGFRWNSPVQGAWS
RKLTTDEAKNLDFRVEILN

Sequences:

>Translated_259_residues
MELFNKKGLNQLDFLQDQITSKASEIVVTNQNKKIEKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLLPV
NNNEAEHVNCISAEVTNISQPWEDGLNFFLKLVDCSDFIVAHNVEFDKKWFGKGRLPMLNKKWICSLDDINWSFQKSLKT
RPSVTDLALSFSIPVWNLHRALSDCFYISEVFKKCDNLEELLLKATEPRFLYKALVSYEDRSLAKNAGFRWNSPVQGAWS
RKLTTDEAKNLDFRVEILN
>Mature_259_residues
MELFNKKGLNQLDFLQDQITSKASEIVVTNQNKKIEKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLLPV
NNNEAEHVNCISAEVTNISQPWEDGLNFFLKLVDCSDFIVAHNVEFDKKWFGKGRLPMLNKKWICSLDDINWSFQKSLKT
RPSVTDLALSFSIPVWNLHRALSDCFYISEVFKKCDNLEELLLKATEPRFLYKALVSYEDRSLAKNAGFRWNSPVQGAWS
RKLTTDEAKNLDFRVEILN

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 29797; Mature: 29797

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFNKKGLNQLDFLQDQITSKASEIVVTNQNKKIEKILILDTETTGLDENKDEVIEIGC
CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCHHEEEEH
ILFDVSFKCVLSQVSFLLPVNNNEAEHVNCISAEVTNISQPWEDGLNFFLKLVDCSDFIV
HEEHHHHHHHHHHHHEEEECCCCCCCEEEEEHHHHCCCCCCHHHHHHHHHHHHCCCCEEE
AHNVEFDKKWFGKGRLPMLNKKWICSLDDINWSFQKSLKTRPSVTDLALSFSIPVWNLHR
EECCCCCHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCHHHEEEEECCCHHHHHH
ALSDCFYISEVFKKCDNLEELLLKATEPRFLYKALVSYEDRSLAKNAGFRWNSPVQGAWS
HHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC
RKLTTDEAKNLDFRVEILN
CCCCCCHHCCCEEEEEEEC
>Mature Secondary Structure
MELFNKKGLNQLDFLQDQITSKASEIVVTNQNKKIEKILILDTETTGLDENKDEVIEIGC
CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCHHEEEEH
ILFDVSFKCVLSQVSFLLPVNNNEAEHVNCISAEVTNISQPWEDGLNFFLKLVDCSDFIV
HEEHHHHHHHHHHHHEEEECCCCCCCEEEEEHHHHCCCCCCHHHHHHHHHHHHCCCCEEE
AHNVEFDKKWFGKGRLPMLNKKWICSLDDINWSFQKSLKTRPSVTDLALSFSIPVWNLHR
EECCCCCHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCHHHEEEEECCCHHHHHH
ALSDCFYISEVFKKCDNLEELLLKATEPRFLYKALVSYEDRSLAKNAGFRWNSPVQGAWS
HHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC
RKLTTDEAKNLDFRVEILN
CCCCCCHHCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA