| Definition | Prochlorococcus marinus str. MIT 9312, complete genome. |
|---|---|
| Accession | NC_007577 |
| Length | 1,709,204 |
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The map label for this gene is chlD [H]
Identifier: 78778675
GI number: 78778675
Start: 277620
End: 279797
Strand: Direct
Name: chlD [H]
Synonym: PMT9312_0290
Alternate gene names: 78778675
Gene position: 277620-279797 (Clockwise)
Preceding gene: 78778671
Following gene: 78778678
Centisome position: 16.24
GC content: 36.46
Gene sequence:
>2178_bases GTGATTTTGAACCCCGAGTTAACAGAAAAAGGAGAGATAAAGGATTTAATGAAGTCAAAGGATTCTTTTAGAGCTTTCCC TTTAGCTGCAATTACAGGTCATAGCTTATTAAAATTATCTTTGCTTCTAGCAGCAGTTGATCCCAGTTTAGGGGGAGTGG TTATCGCTGGCGGAAGAGGTACTGGAAAGTCAGTATTAGCAAGGGGTTTGCATACTTTACTCCCTCCTATAGAGGTATTA GATAATGAATTAATACTGGAAAAGCTAACTAAGAGAAATAGTAATACTTCATTAAGACCTATTGGTAGGAACCTAGATCC AGATAAACCTGAAGAATGGGATATTAGTACTAATAAATTGTTAGAGGAGGCAATTGGAAGTGATTATTTGAATCAAATTG AAGAAATTCCAAAAAAAGTAAGAGAGGCACCATTTATTCAAGTTCCTATTGGCATAACTGAAGACAGACTTGTTGGATCA ATTGACGTTGCTGCTTCATTAAGTACGGGGGAACAAGTTTTTCAGCCTGGAATTTTGGCAGAAGCTCATAGAGGTGTTCT TTATGTAGACGATATAAATTTATTGGATGATGGTATTGTAAATTTAATTCTTGAAGCTACGGGAAGAGAGAAAAATAATA TTGAAAGAGATGGTTTGAGCCTTTCTCATCCTTGTAAGTCACTTTTAATAGCAACTTATAATCCTGAAGAAGGTGCTTTA AGAGATCATGTTTTAGATCGTTTTGCGATTGTGCTTTCCGCAGATCAATCTATTGATAATACTCAAAGAGTTGAGATTAC AAAATCTGTTTTATCACACGCAGAAAATAATATTAAATTTTCAGAAAAGTGGTCCGAAGAATCTGATAATTTATCTACTC AATTAATTTTAGCAAGGCAGTGGTTAAAGGATGTCAAGATAACAAAAGAGCAAATAACCTATTTAGTGAATGAGGCTCTT AGAGGAGGCGTAGAAGGTCATAGGTCAGAATTGTTTGCAGTAAAAGTAGCAAAGGCAAATGCAGCTCTTAGGGGTGATGA GAATGTAAATTCTGAAGACCTAAAAGTCGCAGTAAGGTTAGTTATCCTTCCGAGAGCAATGCAAATACCACCTGAAGATG AAGATATACAACCTCCTCCTCCAGAGGATCAGAGTCCTCCTCCCCCACCTCAATCAAATAATGATGACTCGGAACCTGAG GCTAATGAAAACGATAATAATCAAGATCAAGAGCAAGAAGAAGATAATTCTGATGGAGAAGAAGAATCTACCCCTGAAAT ACCCGAAGAATTTATATTAGATCCTGAGGCATGTATGGTTGACCCTGATTTACTGCTTTTTTCATCTGCCAAAGCAAAAG CAGGAAATAGTGGAAGTAGATCAGTGATATTTAGTGACAGTAGAGGAAGATATGTAAAGCCAGTTATTCCAAGAGGCAAA GTAAAAAGAATTGCAGTAGATGCAACTCTTCGAGCTGCTGCACCTTATCAAAAATCAAGAAGATTAAGAAACCCTAATAA ATCAATAGTTATTGAAGAAAATGATTTTAGAGCAAAGCTTTTACAAAAAAAAGCAGGTGCATTAGTTATTTTTCTGGTTG ATGCGAGCGGCTCTATGGCATTAAATAGAATGCAAAGTGCCAAAGGTGCAGTAATAAGACTTTTGACAGAGGCATATGAA AATAGAGATGAAGTAGCTCTAATTCCCTTTAGAGGTAATCAGGCCGAAGTTCTTTTACCTCCAACAAGATCTATAACTGC AGCAAAAAGAAGGCTTGAAACAATGCCTTGCGGAGGAGGATCACCTTTGGCTCATGGGCTAACACAATCAGCGAAAGTAG CAAAAAATGCTCTTTCTACAGGAGATATCGGTCAAGTTATTGTTGTGGCTATTACTGATGGAAGAGGCAATGTACCCTTA GGATTGTCCTTAGGAAAAAATGAGGTTGAAGAAAAAGATAATGAAAATGTCAATTTAAAACAAGAGGTTCTTGATATTGC TGCAAAATATCCGATACTTGGAATAAAACTCTTAATAATTGATACAGAGAGAAAATTTATTGCAAGTGGCTTTGGTAAAG AATTAGCAGAGGCAGCTAGAGGTAAATATGTTCAATTGCCAAAAGCTACAGATAAAGCAATCGCAGCTATGGCTTTAAAT GCTATAAATGAATTCTGA
Upstream 100 bases:
>100_bases CTCCTAGGGATATACATAGTCCATTTTTGATATTAAGATTTGATAATTCCACTACAAAAAACAAAGTTATTGGATAAATT CTATATCAGGCATTTTTAAA
Downstream 100 bases:
>100_bases TTCTAAATTATGGATAAATTTCGTTAAGAAATTTTGACAGTCCAATAGTTAAGTCCCTTATAGATTTGGTTAATTCTTTA TCTTTTGTTAATTTTACAAA
Product: protoporphyrin IX magnesium chelatase subunit ChlD
Products: NA
Alternate protein names: Mg-chelatase subunit D; Mg-protoporphyrin IX chelatase [H]
Number of amino acids: Translated: 725; Mature: 725
Protein sequence:
>725_residues MILNPELTEKGEIKDLMKSKDSFRAFPLAAITGHSLLKLSLLLAAVDPSLGGVVIAGGRGTGKSVLARGLHTLLPPIEVL DNELILEKLTKRNSNTSLRPIGRNLDPDKPEEWDISTNKLLEEAIGSDYLNQIEEIPKKVREAPFIQVPIGITEDRLVGS IDVAASLSTGEQVFQPGILAEAHRGVLYVDDINLLDDGIVNLILEATGREKNNIERDGLSLSHPCKSLLIATYNPEEGAL RDHVLDRFAIVLSADQSIDNTQRVEITKSVLSHAENNIKFSEKWSEESDNLSTQLILARQWLKDVKITKEQITYLVNEAL RGGVEGHRSELFAVKVAKANAALRGDENVNSEDLKVAVRLVILPRAMQIPPEDEDIQPPPPEDQSPPPPPQSNNDDSEPE ANENDNNQDQEQEEDNSDGEEESTPEIPEEFILDPEACMVDPDLLLFSSAKAKAGNSGSRSVIFSDSRGRYVKPVIPRGK VKRIAVDATLRAAAPYQKSRRLRNPNKSIVIEENDFRAKLLQKKAGALVIFLVDASGSMALNRMQSAKGAVIRLLTEAYE NRDEVALIPFRGNQAEVLLPPTRSITAAKRRLETMPCGGGSPLAHGLTQSAKVAKNALSTGDIGQVIVVAITDGRGNVPL GLSLGKNEVEEKDNENVNLKQEVLDIAAKYPILGIKLLIIDTERKFIASGFGKELAEAARGKYVQLPKATDKAIAAMALN AINEF
Sequences:
>Translated_725_residues MILNPELTEKGEIKDLMKSKDSFRAFPLAAITGHSLLKLSLLLAAVDPSLGGVVIAGGRGTGKSVLARGLHTLLPPIEVL DNELILEKLTKRNSNTSLRPIGRNLDPDKPEEWDISTNKLLEEAIGSDYLNQIEEIPKKVREAPFIQVPIGITEDRLVGS IDVAASLSTGEQVFQPGILAEAHRGVLYVDDINLLDDGIVNLILEATGREKNNIERDGLSLSHPCKSLLIATYNPEEGAL RDHVLDRFAIVLSADQSIDNTQRVEITKSVLSHAENNIKFSEKWSEESDNLSTQLILARQWLKDVKITKEQITYLVNEAL RGGVEGHRSELFAVKVAKANAALRGDENVNSEDLKVAVRLVILPRAMQIPPEDEDIQPPPPEDQSPPPPPQSNNDDSEPE ANENDNNQDQEQEEDNSDGEEESTPEIPEEFILDPEACMVDPDLLLFSSAKAKAGNSGSRSVIFSDSRGRYVKPVIPRGK VKRIAVDATLRAAAPYQKSRRLRNPNKSIVIEENDFRAKLLQKKAGALVIFLVDASGSMALNRMQSAKGAVIRLLTEAYE NRDEVALIPFRGNQAEVLLPPTRSITAAKRRLETMPCGGGSPLAHGLTQSAKVAKNALSTGDIGQVIVVAITDGRGNVPL GLSLGKNEVEEKDNENVNLKQEVLDIAAKYPILGIKLLIIDTERKFIASGFGKELAEAARGKYVQLPKATDKAIAAMALN AINEF >Mature_725_residues MILNPELTEKGEIKDLMKSKDSFRAFPLAAITGHSLLKLSLLLAAVDPSLGGVVIAGGRGTGKSVLARGLHTLLPPIEVL DNELILEKLTKRNSNTSLRPIGRNLDPDKPEEWDISTNKLLEEAIGSDYLNQIEEIPKKVREAPFIQVPIGITEDRLVGS IDVAASLSTGEQVFQPGILAEAHRGVLYVDDINLLDDGIVNLILEATGREKNNIERDGLSLSHPCKSLLIATYNPEEGAL RDHVLDRFAIVLSADQSIDNTQRVEITKSVLSHAENNIKFSEKWSEESDNLSTQLILARQWLKDVKITKEQITYLVNEAL RGGVEGHRSELFAVKVAKANAALRGDENVNSEDLKVAVRLVILPRAMQIPPEDEDIQPPPPEDQSPPPPPQSNNDDSEPE ANENDNNQDQEQEEDNSDGEEESTPEIPEEFILDPEACMVDPDLLLFSSAKAKAGNSGSRSVIFSDSRGRYVKPVIPRGK VKRIAVDATLRAAAPYQKSRRLRNPNKSIVIEENDFRAKLLQKKAGALVIFLVDASGSMALNRMQSAKGAVIRLLTEAYE NRDEVALIPFRGNQAEVLLPPTRSITAAKRRLETMPCGGGSPLAHGLTQSAKVAKNALSTGDIGQVIVVAITDGRGNVPL GLSLGKNEVEEKDNENVNLKQEVLDIAAKYPILGIKLLIIDTERKFIASGFGKELAEAARGKYVQLPKATDKAIAAMALN AINEF
Specific function: Involved in chlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX [H]
COG id: COG1240
COG function: function code H; Mg-chelatase subunit ChlD
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VWFA domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR011776 - InterPro: IPR000523 - InterPro: IPR002035 [H]
Pfam domain/function: PF01078 Mg_chelatase; PF00092 VWA [H]
EC number: =6.6.1.1 [H]
Molecular weight: Translated: 79106; Mature: 79106
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILNPELTEKGEIKDLMKSKDSFRAFPLAAITGHSLLKLSLLLAAVDPSLGGVVIAGGRG CCCCCCCCCCCHHHHHHHCCHHHCCCEEHHHCCHHHHHHHHHHHHCCCCCCCEEEECCCC TGKSVLARGLHTLLPPIEVLDNELILEKLTKRNSNTSLRPIGRNLDPDKPEEWDISTNKL CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH LEEAIGSDYLNQIEEIPKKVREAPFIQVPIGITEDRLVGSIDVAASLSTGEQVFQPGILA HHHHHCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEECEEHEEECCCCHHHHCCCCHH EAHRGVLYVDDINLLDDGIVNLILEATGREKNNIERDGLSLSHPCKSLLIATYNPEEGAL HHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHH RDHVLDRFAIVLSADQSIDNTQRVEITKSVLSHAENNIKFSEKWSEESDNLSTQLILARQ HHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCEECHHHCCCCCCCHHHHHHHHH WLKDVKITKEQITYLVNEALRGGVEGHRSELFAVKVAKANAALRGDENVNSEDLKVAVRL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEECCCCCCCHHHHHHHHHE VILPRAMQIPPEDEDIQPPPPEDQSPPPPPQSNNDDSEPEANENDNNQDQEQEEDNSDGE EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC EESTPEIPEEFILDPEACMVDPDLLLFSSAKAKAGNSGSRSVIFSDSRGRYVKPVIPRGK CCCCCCCCHHHCCCCHHHEECCCCEEEECCCCCCCCCCCCEEEEECCCCCEECCCCCCCC VKRIAVDATLRAAAPYQKSRRLRNPNKSIVIEENDFRAKLLQKKAGALVIFLVDASGSMA EEEEEEEHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCEEEEEEEECCCCHH LNRMQSAKGAVIRLLTEAYENRDEVALIPFRGNQAEVLLPPTRSITAAKRRLETMPCGGG HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHCCCCCCC SPLAHGLTQSAKVAKNALSTGDIGQVIVVAITDGRGNVPLGLSLGKNEVEEKDNENVNLK CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEECCCCHHHHHCCCCCCCHH QEVLDIAAKYPILGIKLLIIDTERKFIASGFGKELAEAARGKYVQLPKATDKAIAAMALN HHHHHHHHCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHH AINEF HHHCC >Mature Secondary Structure MILNPELTEKGEIKDLMKSKDSFRAFPLAAITGHSLLKLSLLLAAVDPSLGGVVIAGGRG CCCCCCCCCCCHHHHHHHCCHHHCCCEEHHHCCHHHHHHHHHHHHCCCCCCCEEEECCCC TGKSVLARGLHTLLPPIEVLDNELILEKLTKRNSNTSLRPIGRNLDPDKPEEWDISTNKL CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH LEEAIGSDYLNQIEEIPKKVREAPFIQVPIGITEDRLVGSIDVAASLSTGEQVFQPGILA HHHHHCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEECEEHEEECCCCHHHHCCCCHH EAHRGVLYVDDINLLDDGIVNLILEATGREKNNIERDGLSLSHPCKSLLIATYNPEEGAL HHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHH RDHVLDRFAIVLSADQSIDNTQRVEITKSVLSHAENNIKFSEKWSEESDNLSTQLILARQ HHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCEECHHHCCCCCCCHHHHHHHHH WLKDVKITKEQITYLVNEALRGGVEGHRSELFAVKVAKANAALRGDENVNSEDLKVAVRL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEECCCCCCCHHHHHHHHHE VILPRAMQIPPEDEDIQPPPPEDQSPPPPPQSNNDDSEPEANENDNNQDQEQEEDNSDGE EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC EESTPEIPEEFILDPEACMVDPDLLLFSSAKAKAGNSGSRSVIFSDSRGRYVKPVIPRGK CCCCCCCCHHHCCCCHHHEECCCCEEEECCCCCCCCCCCCEEEEECCCCCEECCCCCCCC VKRIAVDATLRAAAPYQKSRRLRNPNKSIVIEENDFRAKLLQKKAGALVIFLVDASGSMA EEEEEEEHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCEEEEEEEECCCCHH LNRMQSAKGAVIRLLTEAYENRDEVALIPFRGNQAEVLLPPTRSITAAKRRLETMPCGGG HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHCCCCCCC SPLAHGLTQSAKVAKNALSTGDIGQVIVVAITDGRGNVPLGLSLGKNEVEEKDNENVNLK CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEECCCCHHHHHCCCCCCCHH QEVLDIAAKYPILGIKLLIIDTERKFIASGFGKELAEAARGKYVQLPKATDKAIAAMALN HHHHHHHHCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHH AINEF HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA