Click here to switch to the map view.

The map label for this gene is degT [H]

Identifier: 78778671

GI number: 78778671

Start: 273771

End: 274976

Strand: Direct

Name: degT [H]

Synonym: PMT9312_0286

Alternate gene names: 78778671

Gene position: 273771-274976 (Clockwise)

Preceding gene: 78778670

Following gene: 78778675

Centisome position: 16.02

GC content: 31.43

Gene sequence:

>1206_bases
ATGCAGATACCTCCATTTACTTTAAATAGGCAGTACCAAGAAATTGGTTCTGAAATTGAGAGAGAAGTTTTAAAAGTTTT
AAATGGTTGTCAATATATCAAAGGAGAAGAAGTTACCATTTTTGAAGAAAAATTTTCTAATCTGATTGGTGTTGAAAATA
CTATTGGATGTAACAGTGGAACTGATGCTTTAGTGTTAGCTTTGCGCGCATTAGATATTGGTGTGGGAGACGAAGTTATT
ACCTCATCCTTTAGCTTTTTTGCAACTGCAGAGGCTATTAGTGCAGTTGGCGCTCACCCTGTTTTGGTAGATATAGATCC
TGAGACTTATCTTATTAATACTGAACTAATAGAACAGAAAATAAATTCAAATACCAAGGCAATTATGCCAGTTCATTTAT
TTGGTAATGCAGTGAATATGACCTTAATAAAATCATTGGCTAACAAATATGACTTAAAAGTAATCGAAGATTGTGCTCAG
GCAACATGCACAATGTGGGAAAATTCCAAAGTTGGTAGTATCGGTGACATAGGTTGTTTTAGCTTTTTCCCTACCAAGAA
TTTAGGGGCTGCTGGAGATGGTGGAGCAGTGACAACATCTGATCAGAAGATTGCAAGAAAAATTAGAGAACTAGCTGTTC
ATGGTAGCCCAATAAGATATCACCATACTCAAATTGGATATAACAGCAGACTAGATACCATTCAAGCTGCCATATTAAAT
ATCAAAATTAAATATATTTGTAAGTGGATTAATAATCGCCAAAAAATCGCTAATAATTACCTTGATTTATTAGAAAAAAA
TCCATTTATTAGTTTTCCTAAAATTAGCTCTGATTCAATTTCCCATTCTTGGAATCAATTTGTCATCAAATTAAGAAACG
ATAAATATTTTTTAAATGAAGATTTTTCGAATTTATTTGATACTGATTGCAAAAAATACTATTCCTTAAGGAATTTGGTA
AAACAAAAGCTTTCTGAAAAAGGTATTAACTCAATTATCTATTACCCAATTCCAATACATGCACAAATAGCATACAAAAA
TAAAAATTTTTCTAGAACAAAACTTATTAATACAGAGAGGATTTGTACGGAAGTTCTCAGTCTTCCAATGTTTCCTGAAA
TTTCTTATGAAGAGCAAGTTTATGTCGCAGAAAATTTAAATAAAGTTTTAAAGAATTGCATAGAGGAAATTCAAATTTCA
GCATAA

Upstream 100 bases:

>100_bases
GCAATATTAAATGGACTCCTGGTAAAGAACCCAGTTGGTTTAAATGAATTAAAATGTTTTTTTACCCATAGAAATATGGT
TTAGAGTTAATATATTCACT

Downstream 100 bases:

>100_bases
AGTGATTTAAATAATCTTTGCTGTATGTTGTGATCGACAATAGGGGTTGAATAATTATTTTTTTCTAAATTAGATATCTC
GCCATTTAATAGGTCTGAAT

Product: putative pleiotropic regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MQIPPFTLNRQYQEIGSEIEREVLKVLNGCQYIKGEEVTIFEEKFSNLIGVENTIGCNSGTDALVLALRALDIGVGDEVI
TSSFSFFATAEAISAVGAHPVLVDIDPETYLINTELIEQKINSNTKAIMPVHLFGNAVNMTLIKSLANKYDLKVIEDCAQ
ATCTMWENSKVGSIGDIGCFSFFPTKNLGAAGDGGAVTTSDQKIARKIRELAVHGSPIRYHHTQIGYNSRLDTIQAAILN
IKIKYICKWINNRQKIANNYLDLLEKNPFISFPKISSDSISHSWNQFVIKLRNDKYFLNEDFSNLFDTDCKKYYSLRNLV
KQKLSEKGINSIIYYPIPIHAQIAYKNKNFSRTKLINTERICTEVLSLPMFPEISYEEQVYVAENLNKVLKNCIEEIQIS
A

Sequences:

>Translated_401_residues
MQIPPFTLNRQYQEIGSEIEREVLKVLNGCQYIKGEEVTIFEEKFSNLIGVENTIGCNSGTDALVLALRALDIGVGDEVI
TSSFSFFATAEAISAVGAHPVLVDIDPETYLINTELIEQKINSNTKAIMPVHLFGNAVNMTLIKSLANKYDLKVIEDCAQ
ATCTMWENSKVGSIGDIGCFSFFPTKNLGAAGDGGAVTTSDQKIARKIRELAVHGSPIRYHHTQIGYNSRLDTIQAAILN
IKIKYICKWINNRQKIANNYLDLLEKNPFISFPKISSDSISHSWNQFVIKLRNDKYFLNEDFSNLFDTDCKKYYSLRNLV
KQKLSEKGINSIIYYPIPIHAQIAYKNKNFSRTKLINTERICTEVLSLPMFPEISYEEQVYVAENLNKVLKNCIEEIQIS
A
>Mature_401_residues
MQIPPFTLNRQYQEIGSEIEREVLKVLNGCQYIKGEEVTIFEEKFSNLIGVENTIGCNSGTDALVLALRALDIGVGDEVI
TSSFSFFATAEAISAVGAHPVLVDIDPETYLINTELIEQKINSNTKAIMPVHLFGNAVNMTLIKSLANKYDLKVIEDCAQ
ATCTMWENSKVGSIGDIGCFSFFPTKNLGAAGDGGAVTTSDQKIARKIRELAVHGSPIRYHHTQIGYNSRLDTIQAAILN
IKIKYICKWINNRQKIANNYLDLLEKNPFISFPKISSDSISHSWNQFVIKLRNDKYFLNEDFSNLFDTDCKKYYSLRNLV
KQKLSEKGINSIIYYPIPIHAQIAYKNKNFSRTKLINTERICTEVLSLPMFPEISYEEQVYVAENLNKVLKNCIEEIQIS
A

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=389, Percent_Identity=29.5629820051414, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI2367285, Length=358, Percent_Identity=31.8435754189944, Blast_Score=139, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 45195; Mature: 45195

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIPPFTLNRQYQEIGSEIEREVLKVLNGCQYIKGEEVTIFEEKFSNLIGVENTIGCNSG
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCCC
TDALVLALRALDIGVGDEVITSSFSFFATAEAISAVGAHPVLVDIDPETYLINTELIEQK
CHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEEHHHHHHH
INSNTKAIMPVHLFGNAVNMTLIKSLANKYDLKVIEDCAQATCTMWENSKVGSIGDIGCF
HCCCCCEEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
SFFPTKNLGAAGDGGAVTTSDQKIARKIRELAVHGSPIRYHHTQIGYNSRLDTIQAAILN
EECCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHH
IKIKYICKWINNRQKIANNYLDLLEKNPFISFPKISSDSISHSWNQFVIKLRNDKYFLNE
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCEEEEEECCCEEEECC
DFSNLFDTDCKKYYSLRNLVKQKLSEKGINSIIYYPIPIHAQIAYKNKNFSRTKLINTER
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCCHHHCCCHHH
ICTEVLSLPMFPEISYEEQVYVAENLNKVLKNCIEEIQISA
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQIPPFTLNRQYQEIGSEIEREVLKVLNGCQYIKGEEVTIFEEKFSNLIGVENTIGCNSG
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCCC
TDALVLALRALDIGVGDEVITSSFSFFATAEAISAVGAHPVLVDIDPETYLINTELIEQK
CHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEEHHHHHHH
INSNTKAIMPVHLFGNAVNMTLIKSLANKYDLKVIEDCAQATCTMWENSKVGSIGDIGCF
HCCCCCEEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
SFFPTKNLGAAGDGGAVTTSDQKIARKIRELAVHGSPIRYHHTQIGYNSRLDTIQAAILN
EECCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHH
IKIKYICKWINNRQKIANNYLDLLEKNPFISFPKISSDSISHSWNQFVIKLRNDKYFLNE
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCEEEEEECCCEEEECC
DFSNLFDTDCKKYYSLRNLVKQKLSEKGINSIIYYPIPIHAQIAYKNKNFSRTKLINTER
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCCHHHCCCHHH
ICTEVLSLPMFPEISYEEQVYVAENLNKVLKNCIEEIQISA
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]