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The map label for this gene is psbA [H]

Identifier: 78778611

GI number: 78778611

Start: 217578

End: 218660

Strand: Direct

Name: psbA [H]

Synonym: PMT9312_0225

Alternate gene names: 78778611

Gene position: 217578-218660 (Clockwise)

Preceding gene: 78778610

Following gene: 78778612

Centisome position: 12.73

GC content: 44.23

Gene sequence:

>1083_bases
ATGACAACTATTCAGCAGCAGCGTTCTTCGCTGTTAAAGGGTTGGCCACAGTTTTGTGAGTGGGTAACATCAACTAACAA
CAGAATTTATGTTGGTTGGTTCGGCGTCTTAATGATCCCATGCCTACTTGCAGCAGCGGCTTGCTTCATCGTTGCATTCA
TCGCAGCACCACCAGTAGACATCGACGGAATTAGAGAGCCAGTTGCTGGTTCATTCCTATATGGAAACAACATCATCTCA
GGTGCAGTTGTTCCTTCATCCAACGCTATTGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACTGTAGATGAGTGGTT
ATACAACGGTGGTCCTTACCAGCTTGTAATTTTCCACTTCCTAATCGGTATCTCAGCATACATGGGAAGACAGTGGGAGC
TTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTTTCAGCAGCTTTCGCAGTATTTCTT
GTATATCCATTCGGTCAAGGTTCATTCTCTGACGGAATGCCTTTAGGTATCTCTGGAACATTCAACTTCATGTTTGTTTT
CCAGGCAGAGCACAACATTCTTATGCACCCATTCCACATGGCTGGTGTTGCTGGTATGTTCGGAGGATCTCTATTCTCAG
CTATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACTGAGACAGAGTCTCAGAACTATGGTTACAAGTTC
GGACAAGAAGAAGAAACATATAACATCGTTGCAGCTCATGGCTACTTCGGTCGTTTGATCTTCCAATATGCAAGTTTCAA
CAACAGCAGAAGTCTTCACTTCTTCCTAGCTGTATTCCCAGTTGTTTGTGTATGGTTAACTTCAATGGGTATCTGCACAA
TGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCAGTTGTTGATGCAAACGGTAAGATTGTTCCTACATGGGGTGAC
GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCACTTGATCTAGCAGCAGC
TGAGTCTACAACAGTAGCTCTTTCAGCTCCAGCTATCGGTTAA

Upstream 100 bases:

>100_bases
TAATTTACACATTTTTAGCGATTTTGGTCTAGAATTTCGAAGCGGAATTAATTTCCGTTTTATTTACACGTCTCACTTTA
GAGACATACTTTACGAACTC

Downstream 100 bases:

>100_bases
GATTAAAGTTCTTAATTTTACAAGCCCCCTTTTTGGGGGCTTTTTTTTGTTTAATTTTCAATTATTTTCATATAATGTTT
ATATATAGATAAAACATTTG

Product: photosystem q(b) protein

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein; Photosystem II protein D1 [H]

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MTTIQQQRSSLLKGWPQFCEWVTSTNNRIYVGWFGVLMIPCLLAAAACFIVAFIAAPPVDIDGIREPVAGSFLYGNNIIS
GAVVPSSNAIGLHFYPIWEAATVDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFL
VYPFGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMAGVAGMFGGSLFSAMHGSLVTSSLIRETTETESQNYGYKF
GQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAVFPVVCVWLTSMGICTMAFNLNGFNFNQSVVDANGKIVPTWGD
VLNRANLGMEVMHERNAHNFPLDLAAAESTTVALSAPAIG

Sequences:

>Translated_360_residues
MTTIQQQRSSLLKGWPQFCEWVTSTNNRIYVGWFGVLMIPCLLAAAACFIVAFIAAPPVDIDGIREPVAGSFLYGNNIIS
GAVVPSSNAIGLHFYPIWEAATVDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFL
VYPFGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMAGVAGMFGGSLFSAMHGSLVTSSLIRETTETESQNYGYKF
GQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAVFPVVCVWLTSMGICTMAFNLNGFNFNQSVVDANGKIVPTWGD
VLNRANLGMEVMHERNAHNFPLDLAAAESTTVALSAPAIG
>Mature_359_residues
TTIQQQRSSLLKGWPQFCEWVTSTNNRIYVGWFGVLMIPCLLAAAACFIVAFIAAPPVDIDGIREPVAGSFLYGNNIISG
AVVPSSNAIGLHFYPIWEAATVDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLV
YPFGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMAGVAGMFGGSLFSAMHGSLVTSSLIRETTETESQNYGYKFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAVFPVVCVWLTSMGICTMAFNLNGFNFNQSVVDANGKIVPTWGDV
LNRANLGMEVMHERNAHNFPLDLAAAESTTVALSAPAIG

Specific function: This is one of the two reaction center proteins of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005867 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 39608; Mature: 39477

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIQQQRSSLLKGWPQFCEWVTSTNNRIYVGWFGVLMIPCLLAAAACFIVAFIAAPPVD
CCCHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC
IDGIREPVAGSFLYGNNIISGAVVPSSNAIGLHFYPIWEAATVDEWLYNGGPYQLVIFHF
CCCCCCCCCCCEEECCCEEECEEECCCCCEEEEEEECCCCCHHHHHHHCCCCHHHHHHHH
LIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGISGT
HHHHHHHHCCEEEEEEECCCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCC
FNFMFVFQAEHNILMHPFHMAGVAGMFGGSLFSAMHGSLVTSSLIRETTETESQNYGYKF
EEEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAVFPVVCVWLTSMGICTMAFNLNG
CCCCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCC
FNFNQSVVDANGKIVPTWGDVLNRANLGMEVMHERNAHNFPLDLAAAESTTVALSAPAIG
CCCCCCEECCCCEEEECHHHHHHHCCCCHHHHHHCCCCCCCEEEECCCCCEEEEECCCCC
>Mature Secondary Structure 
TTIQQQRSSLLKGWPQFCEWVTSTNNRIYVGWFGVLMIPCLLAAAACFIVAFIAAPPVD
CCHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC
IDGIREPVAGSFLYGNNIISGAVVPSSNAIGLHFYPIWEAATVDEWLYNGGPYQLVIFHF
CCCCCCCCCCCEEECCCEEECEEECCCCCEEEEEEECCCCCHHHHHHHCCCCHHHHHHHH
LIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGISGT
HHHHHHHHCCEEEEEEECCCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCC
FNFMFVFQAEHNILMHPFHMAGVAGMFGGSLFSAMHGSLVTSSLIRETTETESQNYGYKF
EEEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAVFPVVCVWLTSMGICTMAFNLNG
CCCCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCC
FNFNQSVVDANGKIVPTWGDVLNRANLGMEVMHERNAHNFPLDLAAAESTTVALSAPAIG
CCCCCCEECCCCEEEECHHHHHHHCCCCHHHHHHCCCCCCCEEEECCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA