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The map label for this gene is csgD [C]

Identifier: 78778542

GI number: 78778542

Start: 152128

End: 152406

Strand: Direct

Name: csgD [C]

Synonym: PMT9312_0156

Alternate gene names: 78778542

Gene position: 152128-152406 (Clockwise)

Preceding gene: 78778540

Following gene: 78778551

Centisome position: 8.9

GC content: 33.69

Gene sequence:

>279_bases
ATGCAAATGGTTGAAGAAGAAGTAAACAACATTGATATGATGGGTCTCTCAACAAGAGAGATGGAAATCATTGATCTAGT
AGCTGATGGGCTTACAAATCAAGAAATTGCGGTAAAACTAACTATTAGTAAAAGAACTGTTGATAATCATGTAAGTAATA
TGTTTACAAAAACTGGTTCTAAAAATAGAGTGGCACTTTTGAATTGGGCAATGGATAATGGAAAGATCTGTAGAGATGGA
TTTAATTGTTGTTCGCTTCCAGAGTCAGATCAAGATTAG

Upstream 100 bases:

>100_bases
GTCTGCTGAAGTTTTGATTTCAATTGCTTTTGTTTCCTACTTAGTTAACAAGTGTACTGAGATTGCTAAACTTATCTAAT
ATAAAAAAGGAACTGTTTAA

Downstream 100 bases:

>100_bases
TATTAGCCTTAACTTTTGTTGTATTATGAGCTAAATCCATCAAACAATAATTTGTAGAACCTAATTCGAAGAGTTCAGCA
TATGCAATGCATGCATCTTT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator LuxR Family; LuxR Transcriptional Regulator; Transcriptional Regulator LuxR Family Protein; Two Component Transcriptional Regulator; Response Regulator Like-Protein; LuxR Family Transcriptional Regulatory Protein; Bacterial Regulatory Protein LuxR Family; Regulatory Protein LuxR; Sigma-70 Region 4 Family

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MQMVEEEVNNIDMMGLSTREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDNGKICRDG
FNCCSLPESDQD

Sequences:

>Translated_92_residues
MQMVEEEVNNIDMMGLSTREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDNGKICRDG
FNCCSLPESDQD
>Mature_92_residues
MQMVEEEVNNIDMMGLSTREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDNGKICRDG
FNCCSLPESDQD

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10326; Mature: 10326

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
7.6 %Met     (Translated Protein)
10.9 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
7.6 %Met     (Mature Protein)
10.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMVEEEVNNIDMMGLSTREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGS
CCCCHHHHCCEEEECCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCC
KNRVALLNWAMDNGKICRDGFNCCSLPESDQD
CCEEEEEEEECCCCEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MQMVEEEVNNIDMMGLSTREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGS
CCCCHHHHCCEEEECCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCC
KNRVALLNWAMDNGKICRDGFNCCSLPESDQD
CCEEEEEEEECCCCEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA