Click here to switch to the map view.

The map label for this gene is yfhF [C]

Identifier: 78778505

GI number: 78778505

Start: 118078

End: 118470

Strand: Direct

Name: yfhF [C]

Synonym: PMT9312_0119

Alternate gene names: 78778505

Gene position: 118078-118470 (Clockwise)

Preceding gene: 78778502

Following gene: 78778506

Centisome position: 6.91

GC content: 33.33

Gene sequence:

>393_bases
ATGGAAAATTTAGAAGTTAAGCAGGAAATTAAGAATTCTGATGATGGTAAGGGCATTTTGATTACTAATGATGCAATAGA
GCAAATTTCAAATTTATTAAAAGGCCAAATTGATAAGAAAGCACTCAGGGTTGGCGTAAGATCAGGAGGCTGCAGTGGGA
TGAGTTATACGATGGATTTTATAGGAAGTAATGAAATAAACCCCGATGATAAAGTTTATGATTATTCATTGAATTCTAAT
CAAAGCTTTCAAGTTGTTTGCGATCCCAAAAGTCTCTTGTATATATATGGAATGCAATTAGATTTTAGTAAGGAATTAAT
TGGCGGTGGCTTTAATTTTGTAAACCCTAATGCTTCTCAAACTTGTGGTTGTGGAAGTTCCTTTGCAGTTTAA

Upstream 100 bases:

>100_bases
TTTTTTCTTAAAATTATAACAAATCAAGTTTGGATATTGGTTCATCTATGCACCCTAACGATTTAGTTTTTATATTATAA
ATAGTAGGAAATTTCTGGTT

Downstream 100 bases:

>100_bases
ATTACAATGAATAACGAAATTAATCCCATCGAAGAGGATTTTAATGCAGCTCTATCAAAGTATAAAGATGGGCAAGATTT
AATTCCTATCGTTCAAGATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MENLEVKQEIKNSDDGKGILITNDAIEQISNLLKGQIDKKALRVGVRSGGCSGMSYTMDFIGSNEINPDDKVYDYSLNSN
QSFQVVCDPKSLLYIYGMQLDFSKELIGGGFNFVNPNASQTCGCGSSFAV

Sequences:

>Translated_130_residues
MENLEVKQEIKNSDDGKGILITNDAIEQISNLLKGQIDKKALRVGVRSGGCSGMSYTMDFIGSNEINPDDKVYDYSLNSN
QSFQVVCDPKSLLYIYGMQLDFSKELIGGGFNFVNPNASQTCGCGSSFAV
>Mature_130_residues
MENLEVKQEIKNSDDGKGILITNDAIEQISNLLKGQIDKKALRVGVRSGGCSGMSYTMDFIGSNEINPDDKVYDYSLNSN
QSFQVVCDPKSLLYIYGMQLDFSKELIGGGFNFVNPNASQTCGCGSSFAV

Specific function: Unknown

COG id: COG0316

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesB/iscA family. Ycf83 subfamily [H]

Homologues:

Organism=Homo sapiens, GI160420328, Length=132, Percent_Identity=34.8484848484849, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI52426768, Length=113, Percent_Identity=30.0884955752212, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788877, Length=112, Percent_Identity=40.1785714285714, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1786351, Length=111, Percent_Identity=35.1351351351351, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1787974, Length=114, Percent_Identity=29.8245614035088, Blast_Score=62, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI25146411, Length=125, Percent_Identity=32, Blast_Score=81, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193209025, Length=122, Percent_Identity=31.1475409836066, Blast_Score=80, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6323001, Length=112, Percent_Identity=34.8214285714286, Blast_Score=69, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24642263, Length=113, Percent_Identity=34.5132743362832, Blast_Score=74, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24649697, Length=95, Percent_Identity=41.0526315789474, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000361
- InterPro:   IPR016092
- InterPro:   IPR017870 [H]

Pfam domain/function: PF01521 Fe-S_biosyn [H]

EC number: NA

Molecular weight: Translated: 14151; Mature: 14151

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS01152 HESB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLEVKQEIKNSDDGKGILITNDAIEQISNLLKGQIDKKALRVGVRSGGCSGMSYTMDF
CCCCCHHHHHCCCCCCCEEEEECHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCEEEEEE
IGSNEINPDDKVYDYSLNSNQSFQVVCDPKSLLYIYGMQLDFSKELIGGGFNFVNPNASQ
CCCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCCCHHHHCCCCCCCCCCCCC
TCGCGSSFAV
CCCCCCCCCC
>Mature Secondary Structure
MENLEVKQEIKNSDDGKGILITNDAIEQISNLLKGQIDKKALRVGVRSGGCSGMSYTMDF
CCCCCHHHHHCCCCCCCEEEEECHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCEEEEEE
IGSNEINPDDKVYDYSLNSNQSFQVVCDPKSLLYIYGMQLDFSKELIGGGFNFVNPNASQ
CCCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCCCHHHHCCCCCCCCCCCCC
TCGCGSSFAV
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]