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The map label for this gene is cbiD

Identifier: 78778421

GI number: 78778421

Start: 33667

End: 34755

Strand: Direct

Name: cbiD

Synonym: PMT9312_0036

Alternate gene names: 78778421

Gene position: 33667-34755 (Clockwise)

Preceding gene: 78778419

Following gene: 78778422

Centisome position: 1.97

GC content: 29.57

Gene sequence:

>1089_bases
TTGTGGGTTGCTGGAGCTGCTAGGTCAGCATTAAAAAAACTAGTAGGGTTGCCATTTGATAATTATGAACTAATAAAAAT
TCCTAATGAAAAAAAAGAAATAAAAATCGAGATTCATTCTGTTGGTTTACTTAAAGATGACTCGCATGCATTAGGAATTT
CCTTTGCAAAGTCTGGCTTATATCTTGACATTACACAAAACTTAGAAATATGGACAATAGCCTCTTTAGAAAGAAATTCT
TTTAATAATCCTCTTCAAACAAATCCAATAAATATTATTGCAGGATCTGGTGTAGGTATAAAAGAGGATACATCAGAAAT
ATGCATTTCTGATTTTGCAAAAGAAGTTTTATATGAAAATTTATTAGATATTATTCCTGAGGGCTTTAATTTGAAATTAG
AAATTATTTTCCCAAATGGGGTATTTTTAGCTGAAAGAACTAGTAATAAGTCATTTGGTATCGTTGATGGATTATCTATT
ATTGGAACTTCTGCTGAGACTTATTCCAGTGCTTCACCTGATCAATTAGAAGAGGCTAAAACTAATCTAGCAAAGTTAGT
TCAAAATGATTTTAAAGGGAAAGTTGTTTTTGTTATTGGTGAAAATGGTTTAAATTTGGCAAAAAATTGTAATCTTAAAT
TTCCTATTCTAAAGGTTGGCAATTGGATAGGACCATTAATAGTTGATGCTGCAATAAAAAAAGTTAAAACTGTAATTCTT
TTTGGTTATCACGGAAAATTAATTAAATTAGCAGGTGGTATTTTTCATACACATAATCATTTGGCAGATGGAAGAATTGA
GATTCTTGTTTATTTAGCTGTTCAAGAAAAGGTACCAACAGAAATAATAGTCCAATTATCTCACTTAAAGAATCTTGAAG
AAGCCCTATTACTACTTGAAAGATTTGATAAATCTATAGCTGAAAAATTATTCCTTAATTTATCAAATACGATTGAAAAG
CGTTCTTTTACATATGTCAATAGGTATGTAAAAACGGATATGGAAATCGCATCAATCATTTTTGATAGAAAAAGAGAAAT
TAGGTGGGCTGGAACTTACGGTAATAAGTATATTTCTGATTTTCAATGA

Upstream 100 bases:

>100_bases
TTTGTTGTATGGCCACTTTTTGTTAAATAGGTCATTCTTAGATTAGTTCTCATTATATATTTTTCAATTACTTGATTTGA
AAAAAGGATTTTCTTTACCT

Downstream 100 bases:

>100_bases
GATTAATTTTTGATTGATTATGCTTTTGTAAATAAATTGAGCTAACTTTTATACATGAGTCAAACATCTTTAAAAAAAGA
ACGCGATCCTTCAATACTAA

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MWVAGAARSALKKLVGLPFDNYELIKIPNEKKEIKIEIHSVGLLKDDSHALGISFAKSGLYLDITQNLEIWTIASLERNS
FNNPLQTNPINIIAGSGVGIKEDTSEICISDFAKEVLYENLLDIIPEGFNLKLEIIFPNGVFLAERTSNKSFGIVDGLSI
IGTSAETYSSASPDQLEEAKTNLAKLVQNDFKGKVVFVIGENGLNLAKNCNLKFPILKVGNWIGPLIVDAAIKKVKTVIL
FGYHGKLIKLAGGIFHTHNHLADGRIEILVYLAVQEKVPTEIIVQLSHLKNLEEALLLLERFDKSIAEKLFLNLSNTIEK
RSFTYVNRYVKTDMEIASIIFDRKREIRWAGTYGNKYISDFQ

Sequences:

>Translated_362_residues
MWVAGAARSALKKLVGLPFDNYELIKIPNEKKEIKIEIHSVGLLKDDSHALGISFAKSGLYLDITQNLEIWTIASLERNS
FNNPLQTNPINIIAGSGVGIKEDTSEICISDFAKEVLYENLLDIIPEGFNLKLEIIFPNGVFLAERTSNKSFGIVDGLSI
IGTSAETYSSASPDQLEEAKTNLAKLVQNDFKGKVVFVIGENGLNLAKNCNLKFPILKVGNWIGPLIVDAAIKKVKTVIL
FGYHGKLIKLAGGIFHTHNHLADGRIEILVYLAVQEKVPTEIIVQLSHLKNLEEALLLLERFDKSIAEKLFLNLSNTIEK
RSFTYVNRYVKTDMEIASIIFDRKREIRWAGTYGNKYISDFQ
>Mature_362_residues
MWVAGAARSALKKLVGLPFDNYELIKIPNEKKEIKIEIHSVGLLKDDSHALGISFAKSGLYLDITQNLEIWTIASLERNS
FNNPLQTNPINIIAGSGVGIKEDTSEICISDFAKEVLYENLLDIIPEGFNLKLEIIFPNGVFLAERTSNKSFGIVDGLSI
IGTSAETYSSASPDQLEEAKTNLAKLVQNDFKGKVVFVIGENGLNLAKNCNLKFPILKVGNWIGPLIVDAAIKKVKTVIL
FGYHGKLIKLAGGIFHTHNHLADGRIEILVYLAVQEKVPTEIIVQLSHLKNLEEALLLLERFDKSIAEKLFLNLSNTIEK
RSFTYVNRYVKTDMEIASIIFDRKREIRWAGTYGNKYISDFQ

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 40423; Mature: 40423

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWVAGAARSALKKLVGLPFDNYELIKIPNEKKEIKIEIHSVGLLKDDSHALGISFAKSGL
CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCE
YLDITQNLEIWTIASLERNSFNNPLQTNPINIIAGSGVGIKEDTSEICISDFAKEVLYEN
EEEEECCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
LLDIIPEGFNLKLEIIFPNGVFLAERTSNKSFGIVDGLSIIGTSAETYSSASPDQLEEAK
HHHHCCCCCCEEEEEEECCCEEEEEECCCCCCCEECCHHHCCCCCHHCCCCCHHHHHHHH
TNLAKLVQNDFKGKVVFVIGENGLNLAKNCNLKFPILKVGNWIGPLIVDAAIKKVKTVIL
HHHHHHHHHCCCCEEEEEECCCCCCHHHCCCEECCHHHHCCCHHHHHHHHHHHHEEEEEE
FGYHGKLIKLAGGIFHTHNHLADGRIEILVYLAVQEKVPTEIIVQLSHLKNLEEALLLLE
EECCCCEEEECCCHHCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHH
RFDKSIAEKLFLNLSNTIEKRSFTYVNRYVKTDMEIASIIFDRKREIRWAGTYGNKYISD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCHHCC
FQ
CC
>Mature Secondary Structure
MWVAGAARSALKKLVGLPFDNYELIKIPNEKKEIKIEIHSVGLLKDDSHALGISFAKSGL
CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCE
YLDITQNLEIWTIASLERNSFNNPLQTNPINIIAGSGVGIKEDTSEICISDFAKEVLYEN
EEEEECCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
LLDIIPEGFNLKLEIIFPNGVFLAERTSNKSFGIVDGLSIIGTSAETYSSASPDQLEEAK
HHHHCCCCCCEEEEEEECCCEEEEEECCCCCCCEECCHHHCCCCCHHCCCCCHHHHHHHH
TNLAKLVQNDFKGKVVFVIGENGLNLAKNCNLKFPILKVGNWIGPLIVDAAIKKVKTVIL
HHHHHHHHHCCCCEEEEEECCCCCCHHHCCCEECCHHHHCCCHHHHHHHHHHHHEEEEEE
FGYHGKLIKLAGGIFHTHNHLADGRIEILVYLAVQEKVPTEIIVQLSHLKNLEEALLLLE
EECCCCEEEECCCHHCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHH
RFDKSIAEKLFLNLSNTIEKRSFTYVNRYVKTDMEIASIIFDRKREIRWAGTYGNKYISD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCHHCC
FQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA