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The map label for this gene is rbpE [H]

Identifier: 78778398

GI number: 78778398

Start: 16075

End: 16743

Strand: Direct

Name: rbpE [H]

Synonym: PMT9312_0013

Alternate gene names: 78778398

Gene position: 16075-16743 (Clockwise)

Preceding gene: 78778397

Following gene: 78778400

Centisome position: 0.94

GC content: 49.48

Gene sequence:

>669_bases
GTGAGTATTTTTGTTGGCAATTTGCCTTTCCGCGCAGAGCGAGAAGATGTTTTACAGTTGTTTGCCCCTTTTGGTGAGGT
TTTAAATTGTTCTCTTCCTCTTGAAAGAGATACTGGAAGAAAAAGAGGATTTGCATTCGTTGAGATGGCAGATGAAGCAA
TTGAATCAGCAGCTATTGATGGTTTGCAAGGTACAGAGCTTATGGGTAGACCATTAAGAATTAATAAGGCAGAGCCAAGA
GGTTCTGGAGGGTCTCGTAGAGGAGGAAGAGGCGGTGGAAATAATGGCGGCGGCTATGGCGGTGGCGGCTACGGCGGTGG
AAATAATGGCGGTGGCTATGGCGGTGGCGGTGGCGGTGGCGGTGGCGGCTACGGCGGTGGAAATAATGGCGGCGGCTACG
GCGGTGGCGGTGGTGGCTACGGCGGTGGAAATAATGGCGGCGGCTACGGCGGTGGCGGTGGTGGCTATGGCGGTGGAAAT
AATGGCGGCGGCTATGGCGGTGGTAATCCTGAACCTAAAACTTCTTATACGAATAACTCCTCGGGAGCTGAAGGTTGGGA
AGATAGAAGTTATGGAAACTCTTCTGAAAACTCTGAATATGAAAGTGGCAGAAGTAGGAGAAAAAGAGGAGTTTCAAACG
AGAGTAATTTATCAAATGAAGAGAATTAA

Upstream 100 bases:

>100_bases
TTTCTACAACAAGGGTATGCTTTGAAGTAGAATAATAAGGTAATGTTATAAAACTACCTTAAGTAGTTTTTTAATTAGGT
TTTTCTTTGTTGAGTTTAAA

Downstream 100 bases:

>100_bases
TAACCCATTTCTTCAAGTCTAGAAGTTAACTTAAGAAGATAATCAATATCTAATTCCTTTTTTATAGATTTAGTTGAAAT
TTGATTTCTCCAAACTTTAG

Product: RNA-binding region RNP-1 (RNA recognition motif)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MSIFVGNLPFRAEREDVLQLFAPFGEVLNCSLPLERDTGRKRGFAFVEMADEAIESAAIDGLQGTELMGRPLRINKAEPR
GSGGSRRGGRGGGNNGGGYGGGGYGGGNNGGGYGGGGGGGGGGYGGGNNGGGYGGGGGGYGGGNNGGGYGGGGGGYGGGN
NGGGYGGGNPEPKTSYTNNSSGAEGWEDRSYGNSSENSEYESGRSRRKRGVSNESNLSNEEN

Sequences:

>Translated_222_residues
MSIFVGNLPFRAEREDVLQLFAPFGEVLNCSLPLERDTGRKRGFAFVEMADEAIESAAIDGLQGTELMGRPLRINKAEPR
GSGGSRRGGRGGGNNGGGYGGGGYGGGNNGGGYGGGGGGGGGGYGGGNNGGGYGGGGGGYGGGNNGGGYGGGGGGYGGGN
NGGGYGGGNPEPKTSYTNNSSGAEGWEDRSYGNSSENSEYESGRSRRKRGVSNESNLSNEEN
>Mature_221_residues
SIFVGNLPFRAEREDVLQLFAPFGEVLNCSLPLERDTGRKRGFAFVEMADEAIESAAIDGLQGTELMGRPLRINKAEPRG
SGGSRRGGRGGGNNGGGYGGGGYGGGNNGGGYGGGGGGGGGGYGGGNNGGGYGGGGGGYGGGNNGGGYGGGGGGYGGGNN
GGGYGGGNPEPKTSYTNNSSGAEGWEDRSYGNSSENSEYESGRSRRKRGVSNESNLSNEEN

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=42.5, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=41.5584415584416, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=42.8571428571429, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=79, Percent_Identity=35.4430379746835, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 21840; Mature: 21709

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIFVGNLPFRAEREDVLQLFAPFGEVLNCSLPLERDTGRKRGFAFVEMADEAIESAAID
CEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
GLQGTELMGRPLRINKAEPRGSGGSRRGGRGGGNNGGGYGGGGYGGGNNGGGYGGGGGGG
CCCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGGYGGGNNGGGYGGGGGGYGGGNNGGGYGGGGGGYGGGNNGGGYGGGNPEPKTSYTNNS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SGAEGWEDRSYGNSSENSEYESGRSRRKRGVSNESNLSNEEN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SIFVGNLPFRAEREDVLQLFAPFGEVLNCSLPLERDTGRKRGFAFVEMADEAIESAAID
EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
GLQGTELMGRPLRINKAEPRGSGGSRRGGRGGGNNGGGYGGGGYGGGNNGGGYGGGGGGG
CCCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGGYGGGNNGGGYGGGGGGYGGGNNGGGYGGGGGGYGGGNNGGGYGGGNPEPKTSYTNNS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SGAEGWEDRSYGNSSENSEYESGRSRRKRGVSNESNLSNEEN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]