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The map label for this gene is nusB

Identifier: 78778394

GI number: 78778394

Start: 11133

End: 11759

Strand: Direct

Name: nusB

Synonym: PMT9312_0009

Alternate gene names: 78778394

Gene position: 11133-11759 (Clockwise)

Preceding gene: 78778393

Following gene: 78778395

Centisome position: 0.65

GC content: 28.87

Gene sequence:

>627_bases
ATGTATAATAAATCCCTTTCTAGAGAATTATCTTTAATTTCTCTTGGCCTTATAAAAGATAAAGGGGATTTTAAATTAAG
TAAATTTCAGATAGAAGAAATTTTTGAATCTGCTTTGGATTCTTTAATAAACCATTGCAGAGATGAGTTAGATAATTGTC
AAGCTGAGTTAGAAAATGCATCACAAAACATAATAGAGAGTGAATTAAAAGAAGGGGTTGATTCCTCTTATGCAAATGTT
AGAGATGACTTAAAAAAATCTTTAACAAAAATTGAAACTGTTATGAATACACTCTCAATCACTTTAGACTTTCCAAAATT
AATAGTTTCTAGTGGTCAAGTTGATATCAGAGATGATGTGAATCAGAGGATTAGTAAAACCATTAATAATCTTACAATTA
TTGATTCTGATATTGATCAAGCTATGGATGGCTGGAAATTAAAAAGATTACCAAGAATTGATAGAGATATTTTGCGTTTA
GCCTACGTGGATATTAATTTTCTTAATACACCTGTTGCTGTTGCTTGTGATGAGGCTGTTAATTTAGCTAATAAGTATAG
TGATATGCAAGGAAGAAAACTTATTAATGGAATTTTAAGGAGATTACAAACAGTTAAATTCCAATGA

Upstream 100 bases:

>100_bases
TGGGATAGTTAATCCGGATGAGAAAAACAACACTACAAACCCAACATTTTCAAAATTATTCTCTCAATTACGTGCCTCTA
CAAATACTTCTTCTTAATTC

Downstream 100 bases:

>100_bases
TTATTTGATATAAATAAATAGTATTTTAAAATTTACTAAATACGGTCTATAAATATCAATGAAAAATACTGATTCTGATA
ATTCTCAAGAGTGGGCTGCA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MYNKSLSRELSLISLGLIKDKGDFKLSKFQIEEIFESALDSLINHCRDELDNCQAELENASQNIIESELKEGVDSSYANV
RDDLKKSLTKIETVMNTLSITLDFPKLIVSSGQVDIRDDVNQRISKTINNLTIIDSDIDQAMDGWKLKRLPRIDRDILRL
AYVDINFLNTPVAVACDEAVNLANKYSDMQGRKLINGILRRLQTVKFQ

Sequences:

>Translated_208_residues
MYNKSLSRELSLISLGLIKDKGDFKLSKFQIEEIFESALDSLINHCRDELDNCQAELENASQNIIESELKEGVDSSYANV
RDDLKKSLTKIETVMNTLSITLDFPKLIVSSGQVDIRDDVNQRISKTINNLTIIDSDIDQAMDGWKLKRLPRIDRDILRL
AYVDINFLNTPVAVACDEAVNLANKYSDMQGRKLINGILRRLQTVKFQ
>Mature_208_residues
MYNKSLSRELSLISLGLIKDKGDFKLSKFQIEEIFESALDSLINHCRDELDNCQAELENASQNIIESELKEGVDSSYANV
RDDLKKSLTKIETVMNTLSITLDFPKLIVSSGQVDIRDDVNQRISKTINNLTIIDSDIDQAMDGWKLKRLPRIDRDILRL
AYVDINFLNTPVAVACDEAVNLANKYSDMQGRKLINGILRRLQTVKFQ

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 23654; Mature: 23654

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNKSLSRELSLISLGLIKDKGDFKLSKFQIEEIFESALDSLINHCRDELDNCQAELENA
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQNIIESELKEGVDSSYANVRDDLKKSLTKIETVMNTLSITLDFPKLIVSSGQVDIRDDV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
NQRISKTINNLTIIDSDIDQAMDGWKLKRLPRIDRDILRLAYVDINFLNTPVAVACDEAV
HHHHHHHHHCCEEEECHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
NLANKYSDMQGRKLINGILRRLQTVKFQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYNKSLSRELSLISLGLIKDKGDFKLSKFQIEEIFESALDSLINHCRDELDNCQAELENA
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQNIIESELKEGVDSSYANVRDDLKKSLTKIETVMNTLSITLDFPKLIVSSGQVDIRDDV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
NQRISKTINNLTIIDSDIDQAMDGWKLKRLPRIDRDILRLAYVDINFLNTPVAVACDEAV
HHHHHHHHHCCEEEECHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
NLANKYSDMQGRKLINGILRRLQTVKFQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA