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The map label for this gene is ytxD [H]

Identifier: 78358628

GI number: 78358628

Start: 3546342

End: 3547106

Strand: Reverse

Name: ytxD [H]

Synonym: Dde_3589

Alternate gene names: 78358628

Gene position: 3547106-3546342 (Counterclockwise)

Preceding gene: 78358629

Following gene: 78358627

Centisome position: 95.09

GC content: 56.08

Gene sequence:

>765_bases
ATGGATCTGGCAACCATACTCGGCATTGTGATTTCCTTCGGGCTGGTGCTTGCGGGCATTCTCGAAGGCGGCAGTATAAT
GATCTTCGTGTCCATCCCTTCGCTGCTCATCGTGGTGGGCGGCACCATAGGAGCCACGCTGGTCAACTACCCGCTGGCCA
CGGTGCTGGGTGTTATGGGGGTCATCAAAAAAACCTTCAATGCTTCGGCGCAAAGCCCGTCCTCCATCATCGAGCAGTTC
ATGGACTTTGCCAACCGCGCCCGCCGCGAAGGTATCCTGTCGCTGGAACCCGTGATTAAAGAAGTGGAGGACGCCTACCT
GCGCAAAGGGCTGCAGCTTACGGTGGACGGTCTGGAACCGCAGGCCATACAGGAGATTCTGGAAACCGAGATAAGCAGCC
TTGAGTCGCGGCATGAAACAGGGGTGGAAATCATCAACGCCATGGGCGCCTATGCTCCGGCACTGGGTATGATCGGAACG
GTTATCGGACTTGTGCAGATGCTGCAGACCATGAGTGACCCAAGCTCCATCGGTCCGGCCATGGCCGTGGCGCTTATTAC
CACGTTTTACGGCGCTGTGCTGGCGAACCTGGTTTTTATACCCATGGCAGGCAAGCTGAAAATGCGTTCGCGTGAAGAGG
TGACCATGCGCGAAATGCAGATGGAAGGCATTCTGGCGATTTCTCGCGGAGAAAACCCCAGAATAATTCAGGAAAAGCTG
TCAAGCTATCAGCCGCCCAAAGAACGCAAGGCGGATGCCGGTTAG

Upstream 100 bases:

>100_bases
TTTGAACAGGCCGTGGCAGAAGGTGCCACGCTGGTGAGAGTGGGTACAGACATCTTCGGCGAACGTTCCCCCCGCTGACA
GGGAAAAAAGAGAACTCCAT

Downstream 100 bases:

>100_bases
TCCGGCACCAGTGACCGCCGCAGGGCCGGCAGTGCTGCACCCGGTGCGGCAGCACAACAAGGAAGCAGGGCATGGCGCGC
AAGAAGAACAAAAAAGGCGG

Product: chemotaxis protein MotA

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MDLATILGIVISFGLVLAGILEGGSIMIFVSIPSLLIVVGGTIGATLVNYPLATVLGVMGVIKKTFNASAQSPSSIIEQF
MDFANRARREGILSLEPVIKEVEDAYLRKGLQLTVDGLEPQAIQEILETEISSLESRHETGVEIINAMGAYAPALGMIGT
VIGLVQMLQTMSDPSSIGPAMAVALITTFYGAVLANLVFIPMAGKLKMRSREEVTMREMQMEGILAISRGENPRIIQEKL
SSYQPPKERKADAG

Sequences:

>Translated_254_residues
MDLATILGIVISFGLVLAGILEGGSIMIFVSIPSLLIVVGGTIGATLVNYPLATVLGVMGVIKKTFNASAQSPSSIIEQF
MDFANRARREGILSLEPVIKEVEDAYLRKGLQLTVDGLEPQAIQEILETEISSLESRHETGVEIINAMGAYAPALGMIGT
VIGLVQMLQTMSDPSSIGPAMAVALITTFYGAVLANLVFIPMAGKLKMRSREEVTMREMQMEGILAISRGENPRIIQEKL
SSYQPPKERKADAG
>Mature_254_residues
MDLATILGIVISFGLVLAGILEGGSIMIFVSIPSLLIVVGGTIGATLVNYPLATVLGVMGVIKKTFNASAQSPSSIIEQF
MDFANRARREGILSLEPVIKEVEDAYLRKGLQLTVDGLEPQAIQEILETEISSLESRHETGVEIINAMGAYAPALGMIGT
VIGLVQMLQTMSDPSSIGPAMAVALITTFYGAVLANLVFIPMAGKLKMRSREEVTMREMQMEGILAISRGENPRIIQEKL
SSYQPPKERKADAG

Specific function: May be involved in some transport function [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 27194; Mature: 27194

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS01307 MOTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLATILGIVISFGLVLAGILEGGSIMIFVSIPSLLIVVGGTIGATLVNYPLATVLGVMG
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
VIKKTFNASAQSPSSIIEQFMDFANRARREGILSLEPVIKEVEDAYLRKGLQLTVDGLEP
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEECCCCH
QAIQEILETEISSLESRHETGVEIINAMGAYAPALGMIGTVIGLVQMLQTMSDPSSIGPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
MAVALITTFYGAVLANLVFIPMAGKLKMRSREEVTMREMQMEGILAISRGENPRIIQEKL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHH
SSYQPPKERKADAG
HCCCCCHHCCCCCC
>Mature Secondary Structure
MDLATILGIVISFGLVLAGILEGGSIMIFVSIPSLLIVVGGTIGATLVNYPLATVLGVMG
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
VIKKTFNASAQSPSSIIEQFMDFANRARREGILSLEPVIKEVEDAYLRKGLQLTVDGLEP
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEECCCCH
QAIQEILETEISSLESRHETGVEIINAMGAYAPALGMIGTVIGLVQMLQTMSDPSSIGPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
MAVALITTFYGAVLANLVFIPMAGKLKMRSREEVTMREMQMEGILAISRGENPRIIQEKL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHH
SSYQPPKERKADAG
HCCCCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8200532 [H]