Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 78358629

GI number: 78358629

Start: 3547129

End: 3547875

Strand: Reverse

Name: yggS [C]

Synonym: Dde_3590

Alternate gene names: 78358629

Gene position: 3547875-3547129 (Counterclockwise)

Preceding gene: 78358630

Following gene: 78358628

Centisome position: 95.11

GC content: 61.85

Gene sequence:

>747_bases
ATGAATACTGTGCTTGAGCAAGAGGAAAAAGCTTTGTGCGGGCGGCTGGAGTCTGTCCGCCGCCGTCTGGATGACGCAGT
GCGCGCATCGGGGAGAAAGCAGGAAGATGTGACACTGGTGGCGGTATCAAAATTTCATCCGGCGGCCGCGGTGGAAGCAC
TGGCGCGGCTTGCCGGACATGCCGTCTTTGGCGAAAGCTATGTGCAGGAAGCGCAGGAAAAACAGCAGGCGCTGGCCGGT
CTTGCGCTTTCATGGCATTTTATAGGCCATGTGCAGTCACGCAAGGCGCGCGATGTGGCCGGACGTTTTGCTCTGGTGCA
CACGGTGGATAGTGAGAAGCTGGCCTGCAAATTGCATCAGGCAGTCCAGCCCCCGGACGGAGAGCAGCCCGAAGGTGCGC
GCACCGTGCAGGATGTGCTTGTGCAGGTCAACATAGGGTGCGAGCCGCAGAAGTCGGGTGTTGCCGCCGGTGACGGGTTG
CTGCGTCTGGCCGATGCCGTTGCCGGCATGAGCGGGCTGCGGTTGCGGGGCCTTATGTGCATGCCGCCGCTGACGTGTCA
GGGCGAAGAAGCCAGACCGTATTTCGCGCAGCTGCGCGGGCTGCGCGACAGTCTGGAACAGCGGCTGGGCATGCGGCTGC
CGCATCTTTCCATGGGCATGTCGCATGATTTTGAACAGGCCGTGGCAGAAGGTGCCACGCTGGTGAGAGTGGGTACAGAC
ATCTTCGGCGAACGTTCCCCCCGCTGA

Upstream 100 bases:

>100_bases
CTGTTTGGGGCGGTGGCGGCTGTCAAAAAAACGTACGGGAAAACAGGAAGTGCCGGAAGGGATTGCCGCAGGGCGGTCCG
CCGTCACTGTCCGTGAAAGG

Downstream 100 bases:

>100_bases
CAGGGAAAAAAGAGAACTCCATATGGATCTGGCAACCATACTCGGCATTGTGATTTCCTTCGGGCTGGTGCTTGCGGGCA
TTCTCGAAGGCGGCAGTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNTVLEQEEKALCGRLESVRRRLDDAVRASGRKQEDVTLVAVSKFHPAAAVEALARLAGHAVFGESYVQEAQEKQQALAG
LALSWHFIGHVQSRKARDVAGRFALVHTVDSEKLACKLHQAVQPPDGEQPEGARTVQDVLVQVNIGCEPQKSGVAAGDGL
LRLADAVAGMSGLRLRGLMCMPPLTCQGEEARPYFAQLRGLRDSLEQRLGMRLPHLSMGMSHDFEQAVAEGATLVRVGTD
IFGERSPR

Sequences:

>Translated_248_residues
MNTVLEQEEKALCGRLESVRRRLDDAVRASGRKQEDVTLVAVSKFHPAAAVEALARLAGHAVFGESYVQEAQEKQQALAG
LALSWHFIGHVQSRKARDVAGRFALVHTVDSEKLACKLHQAVQPPDGEQPEGARTVQDVLVQVNIGCEPQKSGVAAGDGL
LRLADAVAGMSGLRLRGLMCMPPLTCQGEEARPYFAQLRGLRDSLEQRLGMRLPHLSMGMSHDFEQAVAEGATLVRVGTD
IFGERSPR
>Mature_248_residues
MNTVLEQEEKALCGRLESVRRRLDDAVRASGRKQEDVTLVAVSKFHPAAAVEALARLAGHAVFGESYVQEAQEKQQALAG
LALSWHFIGHVQSRKARDVAGRFALVHTVDSEKLACKLHQAVQPPDGEQPEGARTVQDVLVQVNIGCEPQKSGVAAGDGL
LRLADAVAGMSGLRLRGLMCMPPLTCQGEEARPYFAQLRGLRDSLEQRLGMRLPHLSMGMSHDFEQAVAEGATLVRVGTD
IFGERSPR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=247, Percent_Identity=35.2226720647773, Blast_Score=102, Evalue=3e-22,
Organism=Escherichia coli, GI1789321, Length=244, Percent_Identity=41.8032786885246, Blast_Score=140, Evalue=6e-35,
Organism=Caenorhabditis elegans, GI17533025, Length=252, Percent_Identity=34.5238095238095, Blast_Score=100, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6319435, Length=256, Percent_Identity=32.8125, Blast_Score=112, Evalue=6e-26,
Organism=Drosophila melanogaster, GI45550861, Length=244, Percent_Identity=36.0655737704918, Blast_Score=113, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26909; Mature: 26909

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTVLEQEEKALCGRLESVRRRLDDAVRASGRKQEDVTLVAVSKFHPAAAVEALARLAGH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
AVFGESYVQEAQEKQQALAGLALSWHFIGHVQSRKARDVAGRFALVHTVDSEKLACKLHQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHH
AVQPPDGEQPEGARTVQDVLVQVNIGCEPQKSGVAAGDGLLRLADAVAGMSGLRLRGLMC
HCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCEEE
MPPLTCQGEEARPYFAQLRGLRDSLEQRLGMRLPHLSMGMSHDFEQAVAEGATLVRVGTD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHCCCEEEEECHH
IFGERSPR
HHCCCCCC
>Mature Secondary Structure
MNTVLEQEEKALCGRLESVRRRLDDAVRASGRKQEDVTLVAVSKFHPAAAVEALARLAGH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
AVFGESYVQEAQEKQQALAGLALSWHFIGHVQSRKARDVAGRFALVHTVDSEKLACKLHQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHH
AVQPPDGEQPEGARTVQDVLVQVNIGCEPQKSGVAAGDGLLRLADAVAGMSGLRLRGLMC
HCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCEEE
MPPLTCQGEEARPYFAQLRGLRDSLEQRLGMRLPHLSMGMSHDFEQAVAEGATLVRVGTD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHCCCEEEEECHH
IFGERSPR
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]