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The map label for this gene is istB [H]

Identifier: 78358445

GI number: 78358445

Start: 3368632

End: 3369405

Strand: Reverse

Name: istB [H]

Synonym: Dde_3406

Alternate gene names: 78358445

Gene position: 3369405-3368632 (Counterclockwise)

Preceding gene: 78358446

Following gene: 78358442

Centisome position: 90.33

GC content: 56.98

Gene sequence:

>774_bases
GTGGATAGCCTCCAGCACGAACGAATGGTTTCGGTCTGTGAAAAGCTCAAGCTATGCGCTGTGCCGAACTGCTATGACCA
GCTTGCGGAAGCGGCCGTCAGGCAGGAGAAGAGTTACATACAGTTTCTCGAAGAGGTCTTGCGGGCGGAAGAGGCCTTCC
GCAAAGAGCGGAGCCGTGAAGTAATGACGCGTATGGCGAAATTCCCGGCACCAAAGACCATTGAGGGATATGACTTTTCC
TTTGCCGCAGGGGCTCCGAAGAGACTGATCCAGGAGCTTGCCGGACTGACCTTCCTGAAGCGCAGGGAAAACGTTCTGCT
GCTTGGCCCCAGCGGGGTCGGCAAAACGCATCTGGCAATTGCTCTTGGCCTGCGTGCGGCTGAGGCCGGTCTCAAGGTCC
GCTTCACGACGGCGGCAGACCTCATTCTCCAGTTGGAGACCGCGATCCGGCAAGGCCGCTACGCACAGACCATGAAACGC
TCCGTCAGCGGGCCGAGCCTGCTCATTGTGGATGAGGTCGGCTATCTCCCGATGACAGGCGACCAGGCAAACCTCTTCTT
TCAGGTGGTGGCCAAGCGGTACGAGTCAGGTTCAATCATACTGACTTCCAACTTAAGCTTCGGCGAATGGGAGACCGTCT
TTTCCGGAAATACGGCCCTGACCTCAGCCATGCTCGACCGGCTGCTGCACCACTCCCATGTCATCCAGATCAAGGGAGAC
AGCTACCGGCTGAAAGACAAAATCAAATCCGGCGTGTTCGGAAAAAACAACTGA

Upstream 100 bases:

>100_bases
CCTGCCTTCTGGATGGCACCGGCAAATTGGGAACATGGCCTGTCGAGATGCTTCAGCGTTCCCCAGCGTTTTATGACCGC
TTCCTTCAGGGAGGTGCGTA

Downstream 100 bases:

>100_bases
GGCAGGTGGGTCAAAATTCAGTTGCCGACCGAAACGAAAAGTGGGTCAGTTTTCAACTGCCGTTGACAACCCCTCGTCCG
GTGCCGGGAAATCAGGGAAG

Product: transposase/IS protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MDSLQHERMVSVCEKLKLCAVPNCYDQLAEAAVRQEKSYIQFLEEVLRAEEAFRKERSREVMTRMAKFPAPKTIEGYDFS
FAAGAPKRLIQELAGLTFLKRRENVLLLGPSGVGKTHLAIALGLRAAEAGLKVRFTTAADLILQLETAIRQGRYAQTMKR
SVSGPSLLIVDEVGYLPMTGDQANLFFQVVAKRYESGSIILTSNLSFGEWETVFSGNTALTSAMLDRLLHHSHVIQIKGD
SYRLKDKIKSGVFGKNN

Sequences:

>Translated_257_residues
MDSLQHERMVSVCEKLKLCAVPNCYDQLAEAAVRQEKSYIQFLEEVLRAEEAFRKERSREVMTRMAKFPAPKTIEGYDFS
FAAGAPKRLIQELAGLTFLKRRENVLLLGPSGVGKTHLAIALGLRAAEAGLKVRFTTAADLILQLETAIRQGRYAQTMKR
SVSGPSLLIVDEVGYLPMTGDQANLFFQVVAKRYESGSIILTSNLSFGEWETVFSGNTALTSAMLDRLLHHSHVIQIKGD
SYRLKDKIKSGVFGKNN
>Mature_257_residues
MDSLQHERMVSVCEKLKLCAVPNCYDQLAEAAVRQEKSYIQFLEEVLRAEEAFRKERSREVMTRMAKFPAPKTIEGYDFS
FAAGAPKRLIQELAGLTFLKRRENVLLLGPSGVGKTHLAIALGLRAAEAGLKVRFTTAADLILQLETAIRQGRYAQTMKR
SVSGPSLLIVDEVGYLPMTGDQANLFFQVVAKRYESGSIILTSNLSFGEWETVFSGNTALTSAMLDRLLHHSHVIQIKGD
SYRLKDKIKSGVFGKNN

Specific function: One of two proteins expressed only when there is a tandem repeat of the IS21 insertion sequence, it is necessary for the transposition of plasmids with that tandem repeat [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IS21/IS1162 putative ATP-binding protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR001270
- InterPro:   IPR002611 [H]

Pfam domain/function: PF01695 IstB [H]

EC number: NA

Molecular weight: Translated: 28631; Mature: 28631

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSLQHERMVSVCEKLKLCAVPNCYDQLAEAAVRQEKSYIQFLEEVLRAEEAFRKERSRE
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMTRMAKFPAPKTIEGYDFSFAAGAPKRLIQELAGLTFLKRRENVLLLGPSGVGKTHLAI
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
ALGLRAAEAGLKVRFTTAADLILQLETAIRQGRYAQTMKRSVSGPSLLIVDEVGYLPMTG
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCCCCCCCC
DQANLFFQVVAKRYESGSIILTSNLSFGEWETVFSGNTALTSAMLDRLLHHSHVIQIKGD
CHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHEECCCHHHHHHHHHHHHHCCEEEEECCC
SYRLKDKIKSGVFGKNN
CCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDSLQHERMVSVCEKLKLCAVPNCYDQLAEAAVRQEKSYIQFLEEVLRAEEAFRKERSRE
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMTRMAKFPAPKTIEGYDFSFAAGAPKRLIQELAGLTFLKRRENVLLLGPSGVGKTHLAI
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
ALGLRAAEAGLKVRFTTAADLILQLETAIRQGRYAQTMKRSVSGPSLLIVDEVGYLPMTG
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCCCCCCCC
DQANLFFQVVAKRYESGSIILTSNLSFGEWETVFSGNTALTSAMLDRLLHHSHVIQIKGD
CHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHEECCCHHHHHHHHHHHHHCCEEEEECCC
SYRLKDKIKSGVFGKNN
CCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2540414 [H]