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The map label for this gene is yagA [C]

Identifier: 78358404

GI number: 78358404

Start: 3335977

End: 3336777

Strand: Reverse

Name: yagA [C]

Synonym: Dde_3364

Alternate gene names: 78358404

Gene position: 3336777-3335977 (Counterclockwise)

Preceding gene: 78358405

Following gene: 78358402

Centisome position: 89.45

GC content: 47.07

Gene sequence:

>801_bases
ATGGCAAAGGCAGCCGTGAACGAGAGAAAGGTCAGTATCCGACTGGCGTGTGTTGCGTTTTCCATAAGCCAGACGTGCTA
CAGATATGAATCCAAGTTTTCCGATGAAAATGATCTTATTGCGGAGTGGTTGATTCGGTTAACACATAACCAGCGAAACT
GGGGCTTTGGTCTATGCTTTTTGCATTTGCGTAATGTCCAGAGATTTAAATGGAATCACAAGCGTGTTTACCGAATTTAC
TGTGAACTTGAACTTAATATGCGTATCAAACCTAAAAAACGAATTATTCGGGAAAAGCCGGAGCCACTTGCACAGCCGCA
GCGGGTCAATCAATCGTGGTCAATGGACTTCATGCACGATCAATTACAAAATGGACGCAGCTTCAGGCTGTTTAATGTGA
TAGACGACTTCAACCGCGAAGGGCTGACCATAGAAGCGGATTTCTCCCTTCCCGCAGAGCGTGTAATCCGCACTCTTGAA
CAAGTAATAGAGTGGCGGGGAAAGCCAGAGTCAATTCGCTGCGATAACGGACCGGAATATATTAGCAAAAAATTGCTGCT
ATGGGCTGCCAATCAGGGAATACGCATTGAGCATATTCAACCAGGACAACCTCAACAGAACGCTTACGTGGAGCGGTACA
ATCGGACCGTCCGCTATGATTGGCTTGGGCAGTTTCTGTTCTCAAGCATTGAAGAGGTGCAGGACCATGCCACCAACTGG
CTGTGGACCTACAACAATGAACGACCTAACATGGGAATCGGGGGAATTACCCCTGCCCAAAAACTGAGAATGGCTGCATA
G

Upstream 100 bases:

>100_bases
ATCGTCAGCTGAAGAAGATGTATGCTGAAGAACGCTTGAAGGCAGAGATTGTCAAGGAAGCCCTTGAAAAAAAGTGGTAA
AGCCGTCTTGTCGCCGCAAG

Downstream 100 bases:

>100_bases
CCTCTACTTTTCAGGCCTCCTAAAAATGGGAGGATTACCTAGCCACCTAATGAAAAGCCAAGGACTCCTGGAAAAATACT
AATTGTTTCTTGTGCCCAAT

Product: ISxcd1 transposase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MAKAAVNERKVSIRLACVAFSISQTCYRYESKFSDENDLIAEWLIRLTHNQRNWGFGLCFLHLRNVQRFKWNHKRVYRIY
CELELNMRIKPKKRIIREKPEPLAQPQRVNQSWSMDFMHDQLQNGRSFRLFNVIDDFNREGLTIEADFSLPAERVIRTLE
QVIEWRGKPESIRCDNGPEYISKKLLLWAANQGIRIEHIQPGQPQQNAYVERYNRTVRYDWLGQFLFSSIEEVQDHATNW
LWTYNNERPNMGIGGITPAQKLRMAA

Sequences:

>Translated_266_residues
MAKAAVNERKVSIRLACVAFSISQTCYRYESKFSDENDLIAEWLIRLTHNQRNWGFGLCFLHLRNVQRFKWNHKRVYRIY
CELELNMRIKPKKRIIREKPEPLAQPQRVNQSWSMDFMHDQLQNGRSFRLFNVIDDFNREGLTIEADFSLPAERVIRTLE
QVIEWRGKPESIRCDNGPEYISKKLLLWAANQGIRIEHIQPGQPQQNAYVERYNRTVRYDWLGQFLFSSIEEVQDHATNW
LWTYNNERPNMGIGGITPAQKLRMAA
>Mature_265_residues
AKAAVNERKVSIRLACVAFSISQTCYRYESKFSDENDLIAEWLIRLTHNQRNWGFGLCFLHLRNVQRFKWNHKRVYRIYC
ELELNMRIKPKKRIIREKPEPLAQPQRVNQSWSMDFMHDQLQNGRSFRLFNVIDDFNREGLTIEADFSLPAERVIRTLEQ
VIEWRGKPESIRCDNGPEYISKKLLLWAANQGIRIEHIQPGQPQQNAYVERYNRTVRYDWLGQFLFSSIEEVQDHATNWL
WTYNNERPNMGIGGITPAQKLRMAA

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=285, Percent_Identity=24.5614035087719, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 31635; Mature: 31503

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAAVNERKVSIRLACVAFSISQTCYRYESKFSDENDLIAEWLIRLTHNQRNWGFGLCF
CCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHH
LHLRNVQRFKWNHKRVYRIYCELELNMRIKPKKRIIREKPEPLAQPQRVNQSWSMDFMHD
HHHHHHHHHCCCCCEEEEEEEEEEECEEECHHHHHHHCCCCCCCCHHHCCCCCCHHHHHH
QLQNGRSFRLFNVIDDFNREGLTIEADFSLPAERVIRTLEQVIEWRGKPESIRCDNGPEY
HHHCCCCEEEEEHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCCHHH
ISKKLLLWAANQGIRIEHIQPGQPQQNAYVERYNRTVRYDWLGQFLFSSIEEVQDHATNW
HHHEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHCCE
LWTYNNERPNMGIGGITPAQKLRMAA
EEEECCCCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure 
AKAAVNERKVSIRLACVAFSISQTCYRYESKFSDENDLIAEWLIRLTHNQRNWGFGLCF
CCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHH
LHLRNVQRFKWNHKRVYRIYCELELNMRIKPKKRIIREKPEPLAQPQRVNQSWSMDFMHD
HHHHHHHHHCCCCCEEEEEEEEEEECEEECHHHHHHHCCCCCCCCHHHCCCCCCHHHHHH
QLQNGRSFRLFNVIDDFNREGLTIEADFSLPAERVIRTLEQVIEWRGKPESIRCDNGPEY
HHHCCCCEEEEEHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCCHHH
ISKKLLLWAANQGIRIEHIQPGQPQQNAYVERYNRTVRYDWLGQFLFSSIEEVQDHATNW
HHHEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHCCE
LWTYNNERPNMGIGGITPAQKLRMAA
EEEECCCCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]