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The map label for this gene is ccmO [H]

Identifier: 78358324

GI number: 78358324

Start: 3275851

End: 3276477

Strand: Reverse

Name: ccmO [H]

Synonym: Dde_3284

Alternate gene names: 78358324

Gene position: 3276477-3275851 (Counterclockwise)

Preceding gene: 78358325

Following gene: 78358323

Centisome position: 87.84

GC content: 60.29

Gene sequence:

>627_bases
ATGGGAGAATACATCCGGTACCAGGGCGAAGAGGCGCTGGGGCTTATTGAAACGCTGGGAATGGTTCCGGCCATCTACGG
CGCCGACAGCATGCTCAAGGCCGCCAACGTCCAGCTTATTTCTTACGAAAACGTGGGCTCCACACTTGTGACCGTCATGG
TCAAAGGTGACGTGGCCGCGGTGCAGGCTTCGGTTGACGCAGGCTCGGTGGCCGCGGCGGGCATAGGCAAGCTGACCGCG
CACAATGTCATGCCCCGGCCCATCAGGCCCATCGGCGACATTGTTTCCGTGCATGCCATCACCGACGACGCACCCGCTGG
CGACGGCAGCCGTCCCAGAGCCATGGGTCTCATCGAAACGTTCGGCATCGTATACGTGCTTGAAGCTGCGGATGCAATGC
TCAAGACCGCAGACGTCGAGCTGATCGGCTACGAAAACGTGGCTTCGGGTTATATTTCAGTTCTGGTGCAGGGTGACGTG
GCCGCCTGTCAGGCCGCCGTGGCCGCGGGCGTAAAGGCCGTGCAGGCCATGGGTACAGATGTTTACAGCTCTGTGGTCAT
TCCCACTCCTCATCCGGATGTGGCCAAGATTACAGCCCGTTACGCCCTTGAGAATCTGCTGCCCTAG

Upstream 100 bases:

>100_bases
CCTTTGGGGGAAGGGCTAGGGTTTAGTGAATCTGGGAGAAGTAGACCGGAGGGGGTCTGCTCCGGAAAACAATTTACAGC
AAAGCACGAGGTAGCAGCGT

Downstream 100 bases:

>100_bases
TGGTGACGGACAACGGGCAGCAGTGCGCACGGGGCGTTCTGAATGGTCGCCGCAAGGACACAGGAAACGGCAAAGGGGTA
GATGATGATTGTCGATAACG

Product: carbon dioxide concentrating mechanism protein (PduA related)-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MGEYIRYQGEEALGLIETLGMVPAIYGADSMLKAANVQLISYENVGSTLVTVMVKGDVAAVQASVDAGSVAAAGIGKLTA
HNVMPRPIRPIGDIVSVHAITDDAPAGDGSRPRAMGLIETFGIVYVLEAADAMLKTADVELIGYENVASGYISVLVQGDV
AACQAAVAAGVKAVQAMGTDVYSSVVIPTPHPDVAKITARYALENLLP

Sequences:

>Translated_208_residues
MGEYIRYQGEEALGLIETLGMVPAIYGADSMLKAANVQLISYENVGSTLVTVMVKGDVAAVQASVDAGSVAAAGIGKLTA
HNVMPRPIRPIGDIVSVHAITDDAPAGDGSRPRAMGLIETFGIVYVLEAADAMLKTADVELIGYENVASGYISVLVQGDV
AACQAAVAAGVKAVQAMGTDVYSSVVIPTPHPDVAKITARYALENLLP
>Mature_207_residues
GEYIRYQGEEALGLIETLGMVPAIYGADSMLKAANVQLISYENVGSTLVTVMVKGDVAAVQASVDAGSVAAAGIGKLTAH
NVMPRPIRPIGDIVSVHAITDDAPAGDGSRPRAMGLIETFGIVYVLEAADAMLKTADVELIGYENVASGYISVLVQGDVA
ACQAAVAAGVKAVQAMGTDVYSSVVIPTPHPDVAKITARYALENLLP

Specific function: May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered [H]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=84, Percent_Identity=46.4285714285714, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 21414; Mature: 21283

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEYIRYQGEEALGLIETLGMVPAIYGADSMLKAANVQLISYENVGSTLVTVMVKGDVAA
CCCCEEECCCHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEEECCCCCEEEEEEECCCCEE
VQASVDAGSVAAAGIGKLTAHNVMPRPIRPIGDIVSVHAITDDAPAGDGSRPRAMGLIET
EEECCCCCCCHHHCCCHHHHCCCCCCCCCCHHHHEEEEEECCCCCCCCCCCCHHHHHHHH
FGIVYVLEAADAMLKTADVELIGYENVASGYISVLVQGDVAACQAAVAAGVKAVQAMGTD
HHHHHHHHHHHHHHHHCCEEEEECCHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCH
VYSSVVIPTPHPDVAKITARYALENLLP
HHCEEEECCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GEYIRYQGEEALGLIETLGMVPAIYGADSMLKAANVQLISYENVGSTLVTVMVKGDVAA
CCCEEECCCHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEEECCCCCEEEEEEECCCCEE
VQASVDAGSVAAAGIGKLTAHNVMPRPIRPIGDIVSVHAITDDAPAGDGSRPRAMGLIET
EEECCCCCCCHHHCCCHHHHCCCCCCCCCCHHHHEEEEEECCCCCCCCCCCCHHHHHHHH
FGIVYVLEAADAMLKTADVELIGYENVASGYISVLVQGDVAACQAAVAAGVKAVQAMGTD
HHHHHHHHHHHHHHHHCCEEEEECCHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCH
VYSSVVIPTPHPDVAKITARYALENLLP
HHCEEEECCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2509426 [H]