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The map label for this gene is rnfC [H]

Identifier: 78358306

GI number: 78358306

Start: 3261406

End: 3262734

Strand: Reverse

Name: rnfC [H]

Synonym: Dde_3266

Alternate gene names: 78358306

Gene position: 3262734-3261406 (Counterclockwise)

Preceding gene: 78358307

Following gene: 78358305

Centisome position: 87.47

GC content: 61.4

Gene sequence:

>1329_bases
ATGACTGGACAGACGGTGGAGTGTATTCGATCAGCAGGGGTTGTCGGAGCCGGCGGTGCCGGTCTGCCCACCCATATCAA
GGCCGATGCCTCGGTGGATACTGTTCTGGTGAACGGTGCTTCATGTGAGCCGCTGCTCATGAGCGATCCCTACCTCATAC
AGGCGCATCCCGATATCGTCATCCGCGGTCTTCTGGCCGTCATGGACTGCACTGGCGCCCGTCGCGGCATCATCTGCCTG
AAAGGCAAACACGCGGCAGCCATGGCTGCAGTGCGCGGGGCTGTGACCCGCGAGGGTTCCGGACGGCTTGAGGTGTTTGA
GCTGCGCGACTTTTATCCTGCCGGTGACGAACATGTGCTTGTGCACGAAGTGCTGGGCAGAACCGTGCCGCAGGGGGGCA
TCCCGTTGCAGATAGGGGCCGTGGTGAGCAACGTGGAAACCCTGTATAATGTTGCTCTGGCCATGGAGGGCGCGCCCGTC
ACTCACCGTTATGTGACGGTGTCGGGCGAAGTGAAAAGGCACATGGTGGTCAAGGTGCCGGTGGGCACTCTTGTTTCCGA
CGTGCTGACCTTTGCGGGCGGTCCCGCCATAACTGAGTATAAAGTGGTGGACGGCGGCCCGATGATGGGCCGCGTCCTGC
CCCACACCGGCAGACCCGTGACCAAAACGACCAGCGGCCTGCTGGTGCTGCCGCCCGATCATACCGTTGTGGCGCGCAAG
ATAATGGACCCCGAAAAAGTCCGCAGGATAACCACCAGCATCTGCTGCCAGTGTTCGCACTGTACCGACCTGTGTCCGCG
CAATCTGCTGGGGCACTCGCTGCATCCGCACCGGCTTATGCGCGTGCTTGAGGGCCAGATGCACGCCGGTACCGTGGCGC
GGGAAGCTCTGCTGTGTTCCGAATGCGGCCTGTGTGAAAAATTTGCCTGCCCCATGATGGTTTCCCCCCGCGAGATCAAC
GCGCAGATCAAGCAGGTGCTGCGCCGCGAGGGAGTGCGCTGGGAAAGCACAGGCGAAGAACCGGTGCCGCATCCTTTCAG
AAAAAGCAGATATGTGGCCACCGGCAGACTGCTGCGCCGCCTTGATCTGGTGCAGTACGATACACACCCCGGCTACGCAG
GCGAATATACGCCGCACATGGTGCGCATACCTCTTGCCCAGCATATCGGTGCCCCGGCCGTGTGCGTGGTGGCCCCCGGA
GACACTGTCAGAACGGGTGATCTTATCGGAGAAATACCCGAAAAGAGCATGGGGGCGCGCGTGCATGCCAGCATCAGCGG
CAGGGTCGAGTCCGTGGAAGACGGCATGGTAACCATCAAGGCTTGTTAA

Upstream 100 bases:

>100_bases
CATGGTAGACGCGGTGCCGTAAAGGTACCGCGGGCACAGATATACGCGCGTGTAGCTGTGTGACGACCGGAATCACGCAG
ACCATGAAAAGGGGAAGACG

Downstream 100 bases:

>100_bases
GGGCAGGTGAATATTATGGATTTGCGTACTATCGGATGTGTGGAGCTGAACAGCGTTGCCATGGGCATGCATACTGCGGA
TGAAATGGTAAAGGCTGCTG

Product: electron transfer protein (PduS)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MTGQTVECIRSAGVVGAGGAGLPTHIKADASVDTVLVNGASCEPLLMSDPYLIQAHPDIVIRGLLAVMDCTGARRGIICL
KGKHAAAMAAVRGAVTREGSGRLEVFELRDFYPAGDEHVLVHEVLGRTVPQGGIPLQIGAVVSNVETLYNVALAMEGAPV
THRYVTVSGEVKRHMVVKVPVGTLVSDVLTFAGGPAITEYKVVDGGPMMGRVLPHTGRPVTKTTSGLLVLPPDHTVVARK
IMDPEKVRRITTSICCQCSHCTDLCPRNLLGHSLHPHRLMRVLEGQMHAGTVAREALLCSECGLCEKFACPMMVSPREIN
AQIKQVLRREGVRWESTGEEPVPHPFRKSRYVATGRLLRRLDLVQYDTHPGYAGEYTPHMVRIPLAQHIGAPAVCVVAPG
DTVRTGDLIGEIPEKSMGARVHASISGRVESVEDGMVTIKAC

Sequences:

>Translated_442_residues
MTGQTVECIRSAGVVGAGGAGLPTHIKADASVDTVLVNGASCEPLLMSDPYLIQAHPDIVIRGLLAVMDCTGARRGIICL
KGKHAAAMAAVRGAVTREGSGRLEVFELRDFYPAGDEHVLVHEVLGRTVPQGGIPLQIGAVVSNVETLYNVALAMEGAPV
THRYVTVSGEVKRHMVVKVPVGTLVSDVLTFAGGPAITEYKVVDGGPMMGRVLPHTGRPVTKTTSGLLVLPPDHTVVARK
IMDPEKVRRITTSICCQCSHCTDLCPRNLLGHSLHPHRLMRVLEGQMHAGTVAREALLCSECGLCEKFACPMMVSPREIN
AQIKQVLRREGVRWESTGEEPVPHPFRKSRYVATGRLLRRLDLVQYDTHPGYAGEYTPHMVRIPLAQHIGAPAVCVVAPG
DTVRTGDLIGEIPEKSMGARVHASISGRVESVEDGMVTIKAC
>Mature_441_residues
TGQTVECIRSAGVVGAGGAGLPTHIKADASVDTVLVNGASCEPLLMSDPYLIQAHPDIVIRGLLAVMDCTGARRGIICLK
GKHAAAMAAVRGAVTREGSGRLEVFELRDFYPAGDEHVLVHEVLGRTVPQGGIPLQIGAVVSNVETLYNVALAMEGAPVT
HRYVTVSGEVKRHMVVKVPVGTLVSDVLTFAGGPAITEYKVVDGGPMMGRVLPHTGRPVTKTTSGLLVLPPDHTVVARKI
MDPEKVRRITTSICCQCSHCTDLCPRNLLGHSLHPHRLMRVLEGQMHAGTVAREALLCSECGLCEKFACPMMVSPREINA
QIKQVLRREGVRWESTGEEPVPHPFRKSRYVATGRLLRRLDLVQYDTHPGYAGEYTPHMVRIPLAQHIGAPAVCVVAPGD
TVRTGDLIGEIPEKSMGARVHASISGRVESVEDGMVTIKAC

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=373, Percent_Identity=29.7587131367292, Blast_Score=141, Evalue=7e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 47379; Mature: 47248

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGQTVECIRSAGVVGAGGAGLPTHIKADASVDTVLVNGASCEPLLMSDPYLIQAHPDIV
CCCCHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCEEECCCEEEEECHHHH
IRGLLAVMDCTGARRGIICLKGKHAAAMAAVRGAVTREGSGRLEVFELRDFYPAGDEHVL
HHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEH
VHEVLGRTVPQGGIPLQIGAVVSNVETLYNVALAMEGAPVTHRYVTVSGEVKRHMVVKVP
HHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHEECCCCCEEEEEEEECCCCEEEEEEEC
VGTLVSDVLTFAGGPAITEYKVVDGGPMMGRVLPHTGRPVTKTTSGLLVLPPDHTVVARK
HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHH
IMDPEKVRRITTSICCQCSHCTDLCPRNLLGHSLHPHRLMRVLEGQMHAGTVAREALLCS
HCCHHHHHHHHHHHHHCCCHHHHHCHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
ECGLCEKFACPMMVSPREINAQIKQVLRREGVRWESTGEEPVPHPFRKSRYVATGRLLRR
HCCCHHHHCCCCEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHCCHHHHHHHHHH
LDLVQYDTHPGYAGEYTPHMVRIPLAQHIGAPAVCVVAPGDTVRTGDLIGEIPEKSMGAR
HHHHEECCCCCCCCCCCCEEEEECHHHHCCCCEEEEECCCCCEECCHHHHCCCCCCCCCE
VHASISGRVESVEDGMVTIKAC
EEEEECCCCEECCCCEEEEEEC
>Mature Secondary Structure 
TGQTVECIRSAGVVGAGGAGLPTHIKADASVDTVLVNGASCEPLLMSDPYLIQAHPDIV
CCCHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCEEECCCEEEEECHHHH
IRGLLAVMDCTGARRGIICLKGKHAAAMAAVRGAVTREGSGRLEVFELRDFYPAGDEHVL
HHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEH
VHEVLGRTVPQGGIPLQIGAVVSNVETLYNVALAMEGAPVTHRYVTVSGEVKRHMVVKVP
HHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHEECCCCCEEEEEEEECCCCEEEEEEEC
VGTLVSDVLTFAGGPAITEYKVVDGGPMMGRVLPHTGRPVTKTTSGLLVLPPDHTVVARK
HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHH
IMDPEKVRRITTSICCQCSHCTDLCPRNLLGHSLHPHRLMRVLEGQMHAGTVAREALLCS
HCCHHHHHHHHHHHHHCCCHHHHHCHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
ECGLCEKFACPMMVSPREINAQIKQVLRREGVRWESTGEEPVPHPFRKSRYVATGRLLRR
HCCCHHHHCCCCEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHCCHHHHHHHHHH
LDLVQYDTHPGYAGEYTPHMVRIPLAQHIGAPAVCVVAPGDTVRTGDLIGEIPEKSMGAR
HHHHEECCCCCCCCCCCCEEEEECHHHHCCCCEEEEECCCCCEECCHHHHCCCCCCCCCE
VHASISGRVESVEDGMVTIKAC
EEEEECCCCEECCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA