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The map label for this gene is ycbZ [H]

Identifier: 78357668

GI number: 78357668

Start: 2640953

End: 2643364

Strand: Direct

Name: ycbZ [H]

Synonym: Dde_2626

Alternate gene names: 78357668

Gene position: 2640953-2643364 (Clockwise)

Preceding gene: 78357663

Following gene: 78357669

Centisome position: 70.8

GC content: 58.04

Gene sequence:

>2412_bases
ATGAGCAGACCCAAGCCGCTACCGTCTTCCAAGCTACGCACCAGACTGGACCCCACACGCATTCCCTGCGACGACAGCCG
CACGCTGCCCCGTTCGGCCCCACGCGGCAGCGCCCAGCCCCGCGCCATGCAGGCGCTGGAAATGGCGCTGCACATACGCG
ACACAGGCTATAACATATATCTGGCCGGCGAAGCCAATCTGGGCCGCACGTACATGCTGATGGACGTGCTGACGCCCCGC
GCCCGCAAAATGCCCGCGCCGCCCGACCAGCTGTATGTACACAACTTTGACGACCGCGACCACCCGCGACTTATACTGCT
GCCCGCCGGCAAGGGGCGCGCGCTCAAAAACGACCTTGCCCAGACCATAACGCGTATCCGCAAAGAGATTCCCTCGCGCT
TTGAAAACGACGCCTATGTCAAAAAGCGCAACGAACTGCTGGAGCGCTTTCAGGACATACGCGACAAGCTGCTCAAGGAA
ATGGATTCCGTGGCCGTGGGCAAGGGATTCAACCTTGATCTGGATGACGCGGGCGGAGTCACGCTGTATCCGCTTATCGA
AGGCAAACGCCTGAGCGAAGAAGAATTTGAACGGCTGGACGAAGGACTGCGCAAAAACCTGAAGGTTAAAAGTGACGCGC
TGCTCAAGGTAATGACAGGGCTCATGCGCCAGCTGAGCAAAGCCGAGCAGAGTTTTTCCGAGGGCGAGCGCTCGCTGGAC
CGTAAAGTCATGTCCGAAGTGCTGGACGCACATCTGAAGCCGTTGGCGGAAGAATACAACAGCGCCTGTGCCTGTGCCGT
GCTGTGTGATTATTTTGAAGATCTGCGGGCTGACATGCTGGACAATCTGGACAGCTTTGTGGCCAAGCAGGACACCCCGC
AGCAGGGCGATGCCTCCGGTGGTTCCGCCAGTGAAGAGACTCTGGGACGGTACGAGATTAATCTCTTTGTCGATAATTCC
GAGCTGAAAGGCGCCCCCATCGTCACCGAAGACCACCCCACCCCCGCCAACCTGCTGGGGTGCGTGGAACGCGAGGCCGA
AATGGGCGCGCTGGTCACCGATTTCACGCTGGTAAAAGCAGGCGCCCTGCAAAAGGCCAACGGCGGTTTTCTGCTGCTGC
ATATGGAAGATATTCTGCAGCACCCCGCCGCATGGGAAGGGCTGATGCGCGCCCTGCGGTCTTCACGTGCGCGCATCGAA
GACCCCGACGACGGTGTGGACACCACCAAGACCAAGGGCATAGAGCCGGAACCGCTGGATCTGTCGCTCAAGGTCATCCT
CATCGGTGATGAAGAGCTGTACGAACAGCTGACAGAGCACGACGACCGTTTTCCCAAGCTGTTTAAAATCAAGGCACATA
TGGCCGAAACCATGCGGCGCGACGCTGCAGGGGTCAAAAATTACCTGCACCGCATAGGCCGCATCATAGAAGAAGCCGGT
CTGCCTCCTTTCACCCGCGAGGCCATGGCCGGCATTGTCGATCATGGTTCGCGGATTATCGAAGACCAGAAAAAACTGTC
GCTCAAATTCCCTCTGGTGCGCGAGCTGATGCTCGAAGCCGCCGCGCTGGCATCCATGAAAGGAAAAAAAATGGTGGATG
GCGCCACGCTGCATAACGCACTGGAAGCACGCCATTACCGCAGCAATCTGTATGAAGAGCTCTTCATGGAGGAATACGAC
CGCGAGCTGATAAAAGTGGCTACCAGCGGTCAGGCCGTGGGGCATGTGACAGGGCTTTCAGTCAGCATGTACGGCGACTT
TGAGTTCGGTCTGCCGCACTCCATATCGTGCACGGTGGGCGTGGGCACAGGCGGCATCATCGACCTTGAACGTGAAGCCC
AGCTTGGCGGCCCCATTCACACCAAAGCCATGATGATTCTTAAAAGCTACCTGCTCAGCCAGTTCGCCCATAACAAACCG
CTGGTACTTTCCGGCAGCCTGTGCTTCGAACAGAACTACGTGGGTGTGGAAGGCGACTCCGCCTCCGGTGCGGAACTGGC
CGCGCTGCTTTCGGCGCTGGCTCAGGTGCCCATAGATATGTCGCTGGCGTTCACCGGTGCGGTGTCGCAGTCCGGTTCCA
TCATGGCGGTGGGCGGTGTGACGCGCAAAATCGAAGGATTTTTCGACCTGTGTGTGCGCCGGGGACTTACCGGCAGACAG
GGAGTTATCATTCCGCATGACAACACCGACCATCTTATGCTTAAATACGATGTTCTCAAAGAAGTTGATGCGGGAAAGTT
CGCCATATATCCGGTGCGCCACATCACAGAAGCACTTGAACTGCTTACGGGAATAAAAACAGGTAACAGACGCAAGGACG
GCTCTTTCACGCCGGACTCGCTGTACCACAAGGTGGACAGACGCCTTGCCGAAATGGGCAGGCTGGCCACCAGAGCATTC
CGCTCGCGCTGA

Upstream 100 bases:

>100_bases
ATTGCCTGATGACTTTCAGCATATGCTGCGATATACTTTCCCGTTGAGCAACTGCGTATCGCTTTTGCCCAAGCAAATTC
ACTGCCCGATCAGGAGAATC

Downstream 100 bases:

>100_bases
TTCCGACGGATCAGAAAACCTTTTACAGGAGTCACTTTGATGGCAAGACGTTGTGGTGTTGTTCTCTCTCTGCTTGCTTT
TCTGCTGCTGGGGGCCGCCG

Product: ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 803; Mature: 802

Protein sequence:

>803_residues
MSRPKPLPSSKLRTRLDPTRIPCDDSRTLPRSAPRGSAQPRAMQALEMALHIRDTGYNIYLAGEANLGRTYMLMDVLTPR
ARKMPAPPDQLYVHNFDDRDHPRLILLPAGKGRALKNDLAQTITRIRKEIPSRFENDAYVKKRNELLERFQDIRDKLLKE
MDSVAVGKGFNLDLDDAGGVTLYPLIEGKRLSEEEFERLDEGLRKNLKVKSDALLKVMTGLMRQLSKAEQSFSEGERSLD
RKVMSEVLDAHLKPLAEEYNSACACAVLCDYFEDLRADMLDNLDSFVAKQDTPQQGDASGGSASEETLGRYEINLFVDNS
ELKGAPIVTEDHPTPANLLGCVEREAEMGALVTDFTLVKAGALQKANGGFLLLHMEDILQHPAAWEGLMRALRSSRARIE
DPDDGVDTTKTKGIEPEPLDLSLKVILIGDEELYEQLTEHDDRFPKLFKIKAHMAETMRRDAAGVKNYLHRIGRIIEEAG
LPPFTREAMAGIVDHGSRIIEDQKKLSLKFPLVRELMLEAAALASMKGKKMVDGATLHNALEARHYRSNLYEELFMEEYD
RELIKVATSGQAVGHVTGLSVSMYGDFEFGLPHSISCTVGVGTGGIIDLEREAQLGGPIHTKAMMILKSYLLSQFAHNKP
LVLSGSLCFEQNYVGVEGDSASGAELAALLSALAQVPIDMSLAFTGAVSQSGSIMAVGGVTRKIEGFFDLCVRRGLTGRQ
GVIIPHDNTDHLMLKYDVLKEVDAGKFAIYPVRHITEALELLTGIKTGNRRKDGSFTPDSLYHKVDRRLAEMGRLATRAF
RSR

Sequences:

>Translated_803_residues
MSRPKPLPSSKLRTRLDPTRIPCDDSRTLPRSAPRGSAQPRAMQALEMALHIRDTGYNIYLAGEANLGRTYMLMDVLTPR
ARKMPAPPDQLYVHNFDDRDHPRLILLPAGKGRALKNDLAQTITRIRKEIPSRFENDAYVKKRNELLERFQDIRDKLLKE
MDSVAVGKGFNLDLDDAGGVTLYPLIEGKRLSEEEFERLDEGLRKNLKVKSDALLKVMTGLMRQLSKAEQSFSEGERSLD
RKVMSEVLDAHLKPLAEEYNSACACAVLCDYFEDLRADMLDNLDSFVAKQDTPQQGDASGGSASEETLGRYEINLFVDNS
ELKGAPIVTEDHPTPANLLGCVEREAEMGALVTDFTLVKAGALQKANGGFLLLHMEDILQHPAAWEGLMRALRSSRARIE
DPDDGVDTTKTKGIEPEPLDLSLKVILIGDEELYEQLTEHDDRFPKLFKIKAHMAETMRRDAAGVKNYLHRIGRIIEEAG
LPPFTREAMAGIVDHGSRIIEDQKKLSLKFPLVRELMLEAAALASMKGKKMVDGATLHNALEARHYRSNLYEELFMEEYD
RELIKVATSGQAVGHVTGLSVSMYGDFEFGLPHSISCTVGVGTGGIIDLEREAQLGGPIHTKAMMILKSYLLSQFAHNKP
LVLSGSLCFEQNYVGVEGDSASGAELAALLSALAQVPIDMSLAFTGAVSQSGSIMAVGGVTRKIEGFFDLCVRRGLTGRQ
GVIIPHDNTDHLMLKYDVLKEVDAGKFAIYPVRHITEALELLTGIKTGNRRKDGSFTPDSLYHKVDRRLAEMGRLATRAF
RSR
>Mature_802_residues
SRPKPLPSSKLRTRLDPTRIPCDDSRTLPRSAPRGSAQPRAMQALEMALHIRDTGYNIYLAGEANLGRTYMLMDVLTPRA
RKMPAPPDQLYVHNFDDRDHPRLILLPAGKGRALKNDLAQTITRIRKEIPSRFENDAYVKKRNELLERFQDIRDKLLKEM
DSVAVGKGFNLDLDDAGGVTLYPLIEGKRLSEEEFERLDEGLRKNLKVKSDALLKVMTGLMRQLSKAEQSFSEGERSLDR
KVMSEVLDAHLKPLAEEYNSACACAVLCDYFEDLRADMLDNLDSFVAKQDTPQQGDASGGSASEETLGRYEINLFVDNSE
LKGAPIVTEDHPTPANLLGCVEREAEMGALVTDFTLVKAGALQKANGGFLLLHMEDILQHPAAWEGLMRALRSSRARIED
PDDGVDTTKTKGIEPEPLDLSLKVILIGDEELYEQLTEHDDRFPKLFKIKAHMAETMRRDAAGVKNYLHRIGRIIEEAGL
PPFTREAMAGIVDHGSRIIEDQKKLSLKFPLVRELMLEAAALASMKGKKMVDGATLHNALEARHYRSNLYEELFMEEYDR
ELIKVATSGQAVGHVTGLSVSMYGDFEFGLPHSISCTVGVGTGGIIDLEREAQLGGPIHTKAMMILKSYLLSQFAHNKPL
VLSGSLCFEQNYVGVEGDSASGAELAALLSALAQVPIDMSLAFTGAVSQSGSIMAVGGVTRKIEGFFDLCVRRGLTGRQG
VIIPHDNTDHLMLKYDVLKEVDAGKFAIYPVRHITEALELLTGIKTGNRRKDGSFTPDSLYHKVDRRLAEMGRLATRAFR
SR

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=447, Percent_Identity=34.675615212528, Blast_Score=237, Evalue=2e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 89073; Mature: 88942

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPKPLPSSKLRTRLDPTRIPCDDSRTLPRSAPRGSAQPRAMQALEMALHIRDTGYNIY
CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCEEEE
LAGEANLGRTYMLMDVLTPRARKMPAPPDQLYVHNFDDRDHPRLILLPAGKGRALKNDLA
EECCCCCCCHHHHHHHHCCHHHCCCCCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHH
QTITRIRKEIPSRFENDAYVKKRNELLERFQDIRDKLLKEMDSVAVGKGFNLDLDDAGGV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
TLYPLIEGKRLSEEEFERLDEGLRKNLKVKSDALLKVMTGLMRQLSKAEQSFSEGERSLD
EEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKVMSEVLDAHLKPLAEEYNSACACAVLCDYFEDLRADMLDNLDSFVAKQDTPQQGDASG
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GSASEETLGRYEINLFVDNSELKGAPIVTEDHPTPANLLGCVEREAEMGALVTDFTLVKA
CCCCHHCCCEEEEEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
GALQKANGGFLLLHMEDILQHPAAWEGLMRALRSSRARIEDPDDGVDTTKTKGIEPEPLD
CCCEECCCCEEEEEHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
LSLKVILIGDEELYEQLTEHDDRFPKLFKIKAHMAETMRRDAAGVKNYLHRIGRIIEEAG
EEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPPFTREAMAGIVDHGSRIIEDQKKLSLKFPLVRELMLEAAALASMKGKKMVDGATLHNA
CCCHHHHHHHHHHHCCHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LEARHYRSNLYEELFMEEYDRELIKVATSGQAVGHVTGLSVSMYGDFEFGLPHSISCTVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEEEEECCEECCCCCCCEEEEE
VGTGGIIDLEREAQLGGPIHTKAMMILKSYLLSQFAHNKPLVLSGSLCFEQNYVGVEGDS
CCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCC
ASGAELAALLSALAQVPIDMSLAFTGAVSQSGSIMAVGGVTRKIEGFFDLCVRRGLTGRQ
CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCC
GVIIPHDNTDHLMLKYDVLKEVDAGKFAIYPVRHITEALELLTGIKTGNRRKDGSFTPDS
CEEEECCCCCCEEEEHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
LYHKVDRRLAEMGRLATRAFRSR
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRPKPLPSSKLRTRLDPTRIPCDDSRTLPRSAPRGSAQPRAMQALEMALHIRDTGYNIY
CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCEEEE
LAGEANLGRTYMLMDVLTPRARKMPAPPDQLYVHNFDDRDHPRLILLPAGKGRALKNDLA
EECCCCCCCHHHHHHHHCCHHHCCCCCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHH
QTITRIRKEIPSRFENDAYVKKRNELLERFQDIRDKLLKEMDSVAVGKGFNLDLDDAGGV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
TLYPLIEGKRLSEEEFERLDEGLRKNLKVKSDALLKVMTGLMRQLSKAEQSFSEGERSLD
EEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKVMSEVLDAHLKPLAEEYNSACACAVLCDYFEDLRADMLDNLDSFVAKQDTPQQGDASG
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GSASEETLGRYEINLFVDNSELKGAPIVTEDHPTPANLLGCVEREAEMGALVTDFTLVKA
CCCCHHCCCEEEEEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
GALQKANGGFLLLHMEDILQHPAAWEGLMRALRSSRARIEDPDDGVDTTKTKGIEPEPLD
CCCEECCCCEEEEEHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
LSLKVILIGDEELYEQLTEHDDRFPKLFKIKAHMAETMRRDAAGVKNYLHRIGRIIEEAG
EEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPPFTREAMAGIVDHGSRIIEDQKKLSLKFPLVRELMLEAAALASMKGKKMVDGATLHNA
CCCHHHHHHHHHHHCCHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LEARHYRSNLYEELFMEEYDRELIKVATSGQAVGHVTGLSVSMYGDFEFGLPHSISCTVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEEEEECCEECCCCCCCEEEEE
VGTGGIIDLEREAQLGGPIHTKAMMILKSYLLSQFAHNKPLVLSGSLCFEQNYVGVEGDS
CCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCC
ASGAELAALLSALAQVPIDMSLAFTGAVSQSGSIMAVGGVTRKIEGFFDLCVRRGLTGRQ
CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCC
GVIIPHDNTDHLMLKYDVLKEVDAGKFAIYPVRHITEALELLTGIKTGNRRKDGSFTPDS
CEEEECCCCCCEEEEHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
LYHKVDRRLAEMGRLATRAFRSR
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]