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The map label for this gene is ydhC [H]

Identifier: 78357621

GI number: 78357621

Start: 2595241

End: 2596281

Strand: Direct

Name: ydhC [H]

Synonym: Dde_2579

Alternate gene names: 78357621

Gene position: 2595241-2596281 (Clockwise)

Preceding gene: 78357620

Following gene: 78357625

Centisome position: 69.57

GC content: 56.77

Gene sequence:

>1041_bases
ATGAAGACCCCGCTGCGGACTGACAACGTCGTACCGTTGCGCTGCGGCATGTTCCCCGCGCAGTACAAGCCGCCCATACG
CCGTCATGCAGGGTGCCAACCTTTTGGGTCGGCACCCTGTTTCCGTCTGCGGCATCGGGCGTGGCCCGCTTCTTTGCGGC
GGGGCCGCCCTGCCGCAGCACAATGCAAAAACAGTGTATCCGACAAGATACCGTCATATACAGTTGCTCTTATGACAAAG
CCGGACTATACTCTGCGCTCTGTTTTTCTGTACAGTTATCCGCAACATGCAGGCGACAGCGCCATGCACGCCGGAAGCTC
CGGCAATGCGCGGGCACCTTTTATCTTCAGCCTACTGAAAGGAACAATCGCATTGAGCGGCATTGTCAAACAGACATACA
GCGAACAGGTTGTAGAATACATCAAGGACCGCATTCTCAAAGGTGAACTTTCTCCCGGCGATCCGGTCAAGGAAGCTCTC
ATTGCGCAGAAGCTTGCCATAAGCAGGGCTCCCGTACGCGAGGCACTCCAGATTCTCGCGCGGGAAGGGCTGATTGTGTA
TGAACCGCAGAAAGGCAAACGCATTACCGCCCTCACCGCCAAAGAAATACGCGACAGCTATTTTACCGGCGGAGTGCTGG
AAGCGGCTGCCGTGGCCGCCGCCCTGCCGCTGTATACCGCACAGGATATCGACCTGATGCACCGCACGGTAAACCGCATG
AAAGAAGTGGCCGACACAGGTGCGCCGCTGGACAGCATGACGGGACTGGACAACATCTTTCACGAAACCCTTTTCTCACG
CGTGGACAATCCGCTGCTGGTCGAGCTTTGCCGCCGGTCCTGTCAGGGCATATCCAAATTTCTGCTGTACAGGCACTGGA
TCAAACTGTTTTCAGCACAGGAAGTCTATCTGCGCCACAAAGCGGTGTTTGACGCTGTGGCAAGCGGCGACCCCGCCCTT
ACAGAAAAAGCCATCCGCCATCACTACACAGAGTCCGGAGAACGCATGTCGAACTACGGAGTCGACGTGTTCGACGGCTG
A

Upstream 100 bases:

>100_bases
GTGTGCAGCACTCTGGACAGCATAACGCAGAAAACCGGCATTCCCATTCTGAATCTGCCCGCAGAAGAGCTGTATAAAAT
AAGGGTTGATTTCAAGATGG

Downstream 100 bases:

>100_bases
GCGCCGCAGCCCCGTCATCCGCTCCGGTCCTCGGGGCGGTCTCTTTTTTTGCTCCTGCGGCTGCCGCCGCACGGCAGCCA
ATACCGCACATCCCCCGCAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MKTPLRTDNVVPLRCGMFPAQYKPPIRRHAGCQPFGSAPCFRLRHRAWPASLRRGRPAAAQCKNSVSDKIPSYTVALMTK
PDYTLRSVFLYSYPQHAGDSAMHAGSSGNARAPFIFSLLKGTIALSGIVKQTYSEQVVEYIKDRILKGELSPGDPVKEAL
IAQKLAISRAPVREALQILAREGLIVYEPQKGKRITALTAKEIRDSYFTGGVLEAAAVAAALPLYTAQDIDLMHRTVNRM
KEVADTGAPLDSMTGLDNIFHETLFSRVDNPLLVELCRRSCQGISKFLLYRHWIKLFSAQEVYLRHKAVFDAVASGDPAL
TEKAIRHHYTESGERMSNYGVDVFDG

Sequences:

>Translated_346_residues
MKTPLRTDNVVPLRCGMFPAQYKPPIRRHAGCQPFGSAPCFRLRHRAWPASLRRGRPAAAQCKNSVSDKIPSYTVALMTK
PDYTLRSVFLYSYPQHAGDSAMHAGSSGNARAPFIFSLLKGTIALSGIVKQTYSEQVVEYIKDRILKGELSPGDPVKEAL
IAQKLAISRAPVREALQILAREGLIVYEPQKGKRITALTAKEIRDSYFTGGVLEAAAVAAALPLYTAQDIDLMHRTVNRM
KEVADTGAPLDSMTGLDNIFHETLFSRVDNPLLVELCRRSCQGISKFLLYRHWIKLFSAQEVYLRHKAVFDAVASGDPAL
TEKAIRHHYTESGERMSNYGVDVFDG
>Mature_346_residues
MKTPLRTDNVVPLRCGMFPAQYKPPIRRHAGCQPFGSAPCFRLRHRAWPASLRRGRPAAAQCKNSVSDKIPSYTVALMTK
PDYTLRSVFLYSYPQHAGDSAMHAGSSGNARAPFIFSLLKGTIALSGIVKQTYSEQVVEYIKDRILKGELSPGDPVKEAL
IAQKLAISRAPVREALQILAREGLIVYEPQKGKRITALTAKEIRDSYFTGGVLEAAAVAAALPLYTAQDIDLMHRTVNRM
KEVADTGAPLDSMTGLDNIFHETLFSRVDNPLLVELCRRSCQGISKFLLYRHWIKLFSAQEVYLRHKAVFDAVASGDPAL
TEKAIRHHYTESGERMSNYGVDVFDG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=208, Percent_Identity=25.4807692307692, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 38396; Mature: 38396

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPLRTDNVVPLRCGMFPAQYKPPIRRHAGCQPFGSAPCFRLRHRAWPASLRRGRPAAA
CCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHCCHHHHHCCCCHHH
QCKNSVSDKIPSYTVALMTKPDYTLRSVFLYSYPQHAGDSAMHAGSSGNARAPFIFSLLK
HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCHHHHHHHH
GTIALSGIVKQTYSEQVVEYIKDRILKGELSPGDPVKEALIAQKLAISRAPVREALQILA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
REGLIVYEPQKGKRITALTAKEIRDSYFTGGVLEAAAVAAALPLYTAQDIDLMHRTVNRM
HCCEEEECCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
KEVADTGAPLDSMTGLDNIFHETLFSRVDNPLLVELCRRSCQGISKFLLYRHWIKLFSAQ
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVYLRHKAVFDAVASGDPALTEKAIRHHYTESGERMSNYGVDVFDG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKTPLRTDNVVPLRCGMFPAQYKPPIRRHAGCQPFGSAPCFRLRHRAWPASLRRGRPAAA
CCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHCCHHHHHCCCCHHH
QCKNSVSDKIPSYTVALMTKPDYTLRSVFLYSYPQHAGDSAMHAGSSGNARAPFIFSLLK
HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCHHHHHHHH
GTIALSGIVKQTYSEQVVEYIKDRILKGELSPGDPVKEALIAQKLAISRAPVREALQILA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
REGLIVYEPQKGKRITALTAKEIRDSYFTGGVLEAAAVAAALPLYTAQDIDLMHRTVNRM
HCCEEEECCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
KEVADTGAPLDSMTGLDNIFHETLFSRVDNPLLVELCRRSCQGISKFLLYRHWIKLFSAQ
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVYLRHKAVFDAVASGDPALTEKAIRHHYTESGERMSNYGVDVFDG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]