BacMap

Definition	Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome.
Accession	NC_007519
Length	3,730,232

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The map label for this gene is rfbB [H]

Identifier: 78355898

GI number: 78355898

Start: 883365

End: 884666

Strand: Direct

Name: rfbB [H]

Synonym: Dde_0851

Alternate gene names: 78355898

Gene position: 883365-884666 (Clockwise)

Preceding gene: 78355897

Following gene: 78355899

Centisome position: 23.68

GC content: 52.69

Gene sequence:

>1302_bases
ATGAGCGCTGAACCGATTATACAGGTAGAAAACCTGAGCAAAATGTACCGGCTTGGGCTGAAAAATGAAATTCATGACTC
CATTGCCGAAGCCGCGGTTTCGTGGTTGAAGACTCCTGTTAAAAATTACAGAAATCTTAAGTCGCTGAACACATTCGGTG
TACCTGTTGACGAGGATGATCCCGGCGTGCTGTGGGCCTTGCGCGATGTATCGTTTGAAGTGGCCGAAGGCGAGGTGCTG
GGGATTATCGGACGTAACGGCGCGGGCAAAAGTACGCTGCTCAAGGTGCTTTCACGCATTACAGAGCCGACGCGCGGCAG
GGTGATCATCAATGGCCGCGTGGCCAGCCTGCTTGAAGTGGGCACAGGGTTTCACCCCGACCTTACCGGACGCGAAAATG
TGTTTATGAACGGCAGCATTCTGGGTATGCGCAAAGGAGAAATTGCCGCAAAATTTGATGAAATTGTCGATTTTGCGGGG
CTTGACCGCTTTATTGATACGCCTATCAAACGCTATTCCTCTGGCATGGTCATGCGTTTGGCTTTTTCCGTGGCTGCGCA
TCTGGAGCCTGAAATTCTGATTATCGACGAAGTGCTGGCCGTGGGCGATGCCGCTTTTCAGAAAAAATGCCTTGATAAAA
TGCACAAGGTGGCAAGCGGCGGCCGCACCGTGCTTTTTGTAAGCCACCAGCTTAACTCCGTGAGCGCATTGTGCGGCCGG
GTCATGCATATGGATTCAGGCCGGATAATAAAAAACGGCGATACGCGGCAAGTTATCGATCATTATCTTACCAGTGCGGG
ATTCGGGGTTACAACCGCACTGCACGACCGTAAGGACCGATGCGGCGCAGGGCATGTGCGTTTTGTCAATTCGTGGATTG
AGGATATGCAGGGCAACAGGCTGGCCTCAGCCGTATCCGGCGAACCGGTGCGTATTGCGCTGGAGTATCAGTCGCATGCA
GAAGAATCGTTCAGTGATGTAAAGGTGTACCTGCGGCTCTATTCCATGCTGAACAAGCCTGCCGGGCTGTTCAGCAACGT
GTACACTGAAGAACGCATCGACATTTCCGCGGGGGAAAACGGAGTGCTGTACTGCACTGTGCCCCGCATGATGCTTAACG
GCGGACGTTACTTTTTCCATCTCAAGCTCGAAGCACAGGGGCGGCAGCTCGACCATATCGAAAACGCGGGCTATATGGAG
GTGGAAGCCGGCAACGTATATGCAAACGGAAAAATGCCCAATGATCAATGGGTGTATCTGCACGATTACGGCTGGAGCGG
AGAACCTCTGCATAAAGGCTGA

Upstream 100 bases:

>100_bases
ATGCCGTACGATCCGTTGTTGTATGCGCACTTCCTGCCCGAAGGATGCTGCCGCGGAGGTTGCCATTTCGGGCTGAACCC
AACGATGAAGAGGCGTACTG

Downstream 100 bases:

>100_bases
TGACGGCGGCGCAGACCGTGCTGTGACCGGCTTGTTGCATGGGGTGTTTATTTGTGTACAAACACGCATACAGAGGCCTG
CCGCGTTGAAATGTTGTGTA

Product: ATPase

Products: ADP; phosphate; L-proline [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 432

Protein sequence:

>433_residues
MSAEPIIQVENLSKMYRLGLKNEIHDSIAEAAVSWLKTPVKNYRNLKSLNTFGVPVDEDDPGVLWALRDVSFEVAEGEVL
GIIGRNGAGKSTLLKVLSRITEPTRGRVIINGRVASLLEVGTGFHPDLTGRENVFMNGSILGMRKGEIAAKFDEIVDFAG
LDRFIDTPIKRYSSGMVMRLAFSVAAHLEPEILIIDEVLAVGDAAFQKKCLDKMHKVASGGRTVLFVSHQLNSVSALCGR
VMHMDSGRIIKNGDTRQVIDHYLTSAGFGVTTALHDRKDRCGAGHVRFVNSWIEDMQGNRLASAVSGEPVRIALEYQSHA
EESFSDVKVYLRLYSMLNKPAGLFSNVYTEERIDISAGENGVLYCTVPRMMLNGGRYFFHLKLEAQGRQLDHIENAGYME
VEAGNVYANGKMPNDQWVYLHDYGWSGEPLHKG

Sequences:

>Translated_433_residues
MSAEPIIQVENLSKMYRLGLKNEIHDSIAEAAVSWLKTPVKNYRNLKSLNTFGVPVDEDDPGVLWALRDVSFEVAEGEVL
GIIGRNGAGKSTLLKVLSRITEPTRGRVIINGRVASLLEVGTGFHPDLTGRENVFMNGSILGMRKGEIAAKFDEIVDFAG
LDRFIDTPIKRYSSGMVMRLAFSVAAHLEPEILIIDEVLAVGDAAFQKKCLDKMHKVASGGRTVLFVSHQLNSVSALCGR
VMHMDSGRIIKNGDTRQVIDHYLTSAGFGVTTALHDRKDRCGAGHVRFVNSWIEDMQGNRLASAVSGEPVRIALEYQSHA
EESFSDVKVYLRLYSMLNKPAGLFSNVYTEERIDISAGENGVLYCTVPRMMLNGGRYFFHLKLEAQGRQLDHIENAGYME
VEAGNVYANGKMPNDQWVYLHDYGWSGEPLHKG
>Mature_432_residues
SAEPIIQVENLSKMYRLGLKNEIHDSIAEAAVSWLKTPVKNYRNLKSLNTFGVPVDEDDPGVLWALRDVSFEVAEGEVLG
IIGRNGAGKSTLLKVLSRITEPTRGRVIINGRVASLLEVGTGFHPDLTGRENVFMNGSILGMRKGEIAAKFDEIVDFAGL
DRFIDTPIKRYSSGMVMRLAFSVAAHLEPEILIIDEVLAVGDAAFQKKCLDKMHKVASGGRTVLFVSHQLNSVSALCGRV
MHMDSGRIIKNGDTRQVIDHYLTSAGFGVTTALHDRKDRCGAGHVRFVNSWIEDMQGNRLASAVSGEPVRIALEYQSHAE
ESFSDVKVYLRLYSMLNKPAGLFSNVYTEERIDISAGENGVLYCTVPRMMLNGGRYFFHLKLEAQGRQLDHIENAGYMEV
EAGNVYANGKMPNDQWVYLHDYGWSGEPLHKG

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=190, Percent_Identity=32.1052631578947, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI6005701, Length=192, Percent_Identity=31.25, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI27477115, Length=192, Percent_Identity=30.7291666666667, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI153792144, Length=211, Percent_Identity=28.436018957346, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI150417984, Length=249, Percent_Identity=24.8995983935743, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI31657092, Length=212, Percent_Identity=27.3584905660377, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI27262624, Length=279, Percent_Identity=24.3727598566308, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI27262626, Length=279, Percent_Identity=24.3727598566308, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI47078218, Length=240, Percent_Identity=25.8333333333333, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI45446740, Length=240, Percent_Identity=25.8333333333333, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI105990541, Length=217, Percent_Identity=26.7281105990783, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI116734710, Length=199, Percent_Identity=27.1356783919598, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI27881501, Length=227, Percent_Identity=23.7885462555066, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI30795238, Length=227, Percent_Identity=23.7885462555066, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI42741659, Length=226, Percent_Identity=25.6637168141593, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI9961252, Length=226, Percent_Identity=26.1061946902655, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI4505771, Length=226, Percent_Identity=26.1061946902655, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI21536376, Length=293, Percent_Identity=25.2559726962457, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI9955963, Length=204, Percent_Identity=26.4705882352941, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI73747915, Length=229, Percent_Identity=26.2008733624454, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI1789032, Length=217, Percent_Identity=27.1889400921659, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI87081791, Length=267, Percent_Identity=24.3445692883895, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1786398, Length=214, Percent_Identity=27.1028037383178, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787029, Length=213, Percent_Identity=29.1079812206573, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1788210, Length=219, Percent_Identity=29.6803652968037, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787089, Length=212, Percent_Identity=26.8867924528302, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081709, Length=212, Percent_Identity=24.5283018867925, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=27.9816513761468, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI48995001, Length=211, Percent_Identity=27.9620853080569, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788225, Length=230, Percent_Identity=26.9565217391304, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI48994943, Length=210, Percent_Identity=23.3333333333333, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1790467, Length=217, Percent_Identity=26.7281105990783, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87081834, Length=204, Percent_Identity=31.3725490196078, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789672, Length=217, Percent_Identity=26.2672811059908, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI48994997, Length=215, Percent_Identity=31.1627906976744, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788761, Length=209, Percent_Identity=26.3157894736842, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786319, Length=210, Percent_Identity=24.7619047619048, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87082267, Length=194, Percent_Identity=26.8041237113402, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787370, Length=277, Percent_Identity=23.1046931407942, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787112, Length=202, Percent_Identity=27.7227722772277, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1790525, Length=216, Percent_Identity=26.3888888888889, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788897, Length=206, Percent_Identity=25.2427184466019, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788450, Length=213, Percent_Identity=24.8826291079812, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1786345, Length=255, Percent_Identity=24.7058823529412, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786981, Length=192, Percent_Identity=28.6458333333333, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790739, Length=225, Percent_Identity=24, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87081782, Length=203, Percent_Identity=24.1379310344828, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786803, Length=225, Percent_Identity=23.1111111111111, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787712, Length=228, Percent_Identity=26.3157894736842, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1789873, Length=200, Percent_Identity=28, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI145693107, Length=217, Percent_Identity=25.3456221198157, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=200, Percent_Identity=29, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17565586, Length=225, Percent_Identity=24.4444444444444, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193202349, Length=214, Percent_Identity=26.6355140186916, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=250, Percent_Identity=24, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71983510, Length=250, Percent_Identity=24, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=209, Percent_Identity=27.7511961722488, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71983523, Length=250, Percent_Identity=24, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=210, Percent_Identity=23.3333333333333, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=215, Percent_Identity=26.5116279069767, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17551700, Length=200, Percent_Identity=28, Blast_Score=65, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323959, Length=209, Percent_Identity=25.8373205741627, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI221500365, Length=194, Percent_Identity=25.2577319587629, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007184, Length=194, Percent_Identity=25.2577319587629, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI221512771, Length=206, Percent_Identity=25.2427184466019, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=24.8826291079812, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24666092, Length=204, Percent_Identity=25.9803921568627, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI85726357, Length=216, Percent_Identity=25.9259259259259, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648314, Length=196, Percent_Identity=27.5510204081633, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573571, Length=233, Percent_Identity=23.175965665236, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI85816269, Length=207, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24580553, Length=207, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI28573573, Length=233, Percent_Identity=23.175965665236, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI85724864, Length=207, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24580555, Length=207, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 47951; Mature: 47820

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAEPIIQVENLSKMYRLGLKNEIHDSIAEAAVSWLKTPVKNYRNLKSLNTFGVPVDEDD
CCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PGVLWALRDVSFEVAEGEVLGIIGRNGAGKSTLLKVLSRITEPTRGRVIINGRVASLLEV
CCEEEEEECCEEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH
GTGFHPDLTGRENVFMNGSILGMRKGEIAAKFDEIVDFAGLDRFIDTPIKRYSSGMVMRL
CCCCCCCCCCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AFSVAAHLEPEILIIDEVLAVGDAAFQKKCLDKMHKVASGGRTVLFVSHQLNSVSALCGR
HHHHHHHCCCCEEEEHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
VMHMDSGRIIKNGDTRQVIDHYLTSAGFGVTTALHDRKDRCGAGHVRFVNSWIEDMQGNR
HHCCCCCCEEECCCHHHHHHHHHHHCCCCEEEHHHCCCCCCCCCHHHHHHHHHHHHCCCE
LASAVSGEPVRIALEYQSHAEESFSDVKVYLRLYSMLNKPAGLFSNVYTEERIDISAGEN
EHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEECCCC
GVLYCTVPRMMLNGGRYFFHLKLEAQGRQLDHIENAGYMEVEAGNVYANGKMPNDQWVYL
CEEEEEECHHHHCCCEEEEEEEEECCCCCHHHHCCCCEEEEECCEEEECCCCCCCCEEEE
HDYGWSGEPLHKG
EECCCCCCCCCCC
>Mature Secondary Structure 
SAEPIIQVENLSKMYRLGLKNEIHDSIAEAAVSWLKTPVKNYRNLKSLNTFGVPVDEDD
CCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PGVLWALRDVSFEVAEGEVLGIIGRNGAGKSTLLKVLSRITEPTRGRVIINGRVASLLEV
CCEEEEEECCEEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH
GTGFHPDLTGRENVFMNGSILGMRKGEIAAKFDEIVDFAGLDRFIDTPIKRYSSGMVMRL
CCCCCCCCCCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AFSVAAHLEPEILIIDEVLAVGDAAFQKKCLDKMHKVASGGRTVLFVSHQLNSVSALCGR
HHHHHHHCCCCEEEEHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
VMHMDSGRIIKNGDTRQVIDHYLTSAGFGVTTALHDRKDRCGAGHVRFVNSWIEDMQGNR
HHCCCCCCEEECCCHHHHHHHHHHHCCCCEEEHHHCCCCCCCCCHHHHHHHHHHHHCCCE
LASAVSGEPVRIALEYQSHAEESFSDVKVYLRLYSMLNKPAGLFSNVYTEERIDISAGEN
EHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEECCCC
GVLYCTVPRMMLNGGRYFFHLKLEAQGRQLDHIENAGYMEVEAGNVYANGKMPNDQWVYL
CEEEEEECHHHHCCCEEEEEEEEECCCCCHHHHCCCCEEEEECCEEEECCCCCCCCEEEE
HDYGWSGEPLHKG
EECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-proline [Periplasm]; H2O [C]

Specific reaction: ATP + L-proline [Periplasm] + H2O = ADP + phosphate + L-proline [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]