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The map label for this gene is rnfA [H]

Identifier: 78355632

GI number: 78355632

Start: 608838

End: 609413

Strand: Direct

Name: rnfA [H]

Synonym: Dde_0585

Alternate gene names: 78355632

Gene position: 608838-609413 (Clockwise)

Preceding gene: 78355631

Following gene: 78355633

Centisome position: 16.32

GC content: 55.73

Gene sequence:

>576_bases
ATGGATTATTTCCTGCTTTTGATCTCGGCGATCTTTGTCAACAACATTGTTCTTGCCCAGTATCTCGGTCAGTGCCCCTA
CCTTGGCTGTTCCAAGGAAAAAGGTGTCAGTCTGGGCATGGGCGGCGCCGTCATATTCGTCATGATGCTGGCTACCCCCA
TCACATGGCTGCTGCAGAAGTTTGTGCTTACCCCGCTGCATCTTGATTATCTGCAGACCATTATGTTCATTCTGGTCATT
GCGTCTCTTGTGCAGCTGGTCGAGATGTTCCTTAAAAAGATGGTGCCCCCGCTGTACAGCTCACTGGGCATTTTTCTGCC
GCTCATTACCACCAACTGCGCGGTTCTCGGTGTGGCCATTCTGGTGCAGCGCAAAGAGTTCGACCTCGGCACGTCGGTCT
TTTACGCGTTTGCGGCAGGGCTCGGCTTTATGCTGGCTCTGGTGCTGCTTGCCGGTCTGCGCGAGCGGCTGGAGATCACC
CGTGTGCCGCGCGCCCTTGCGGGTGTGCCGGTGGGGCTGGTTATGGCGGGGCTTATGTCCATGGCTTTCATGGCCTTCCA
GGGCATGATTTCCTAG

Upstream 100 bases:

>100_bases
GCAGGCCAAGCGCAAGGGCATCCCCGAACCGGAAAACCCGACCCCCGGCTGCGAATCGTGTCGCGGCTGCGCCGCAGGTC
ACAGGTAAGGGAGGCTGAAC

Downstream 100 bases:

>100_bases
GGAAGTACCGGAACAAGGACAAGCCCTTTCCGCGGGAAATCCGCAAAGGAAAGGAAAACAGACAAGGACAGCGATATGGT
CGTAACATCCGTGCTTTCCC

Product: RnfABCDGE type electron transport complex subunit A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MDYFLLLISAIFVNNIVLAQYLGQCPYLGCSKEKGVSLGMGGAVIFVMMLATPITWLLQKFVLTPLHLDYLQTIMFILVI
ASLVQLVEMFLKKMVPPLYSSLGIFLPLITTNCAVLGVAILVQRKEFDLGTSVFYAFAAGLGFMLALVLLAGLRERLEIT
RVPRALAGVPVGLVMAGLMSMAFMAFQGMIS

Sequences:

>Translated_191_residues
MDYFLLLISAIFVNNIVLAQYLGQCPYLGCSKEKGVSLGMGGAVIFVMMLATPITWLLQKFVLTPLHLDYLQTIMFILVI
ASLVQLVEMFLKKMVPPLYSSLGIFLPLITTNCAVLGVAILVQRKEFDLGTSVFYAFAAGLGFMLALVLLAGLRERLEIT
RVPRALAGVPVGLVMAGLMSMAFMAFQGMIS
>Mature_191_residues
MDYFLLLISAIFVNNIVLAQYLGQCPYLGCSKEKGVSLGMGGAVIFVMMLATPITWLLQKFVLTPLHLDYLQTIMFILVI
ASLVQLVEMFLKKMVPPLYSSLGIFLPLITTNCAVLGVAILVQRKEFDLGTSVFYAFAAGLGFMLALVLLAGLRERLEIT
RVPRALAGVPVGLVMAGLMSMAFMAFQGMIS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=190, Percent_Identity=50, Blast_Score=185, Evalue=2e-48,
Organism=Escherichia coli, GI1787919, Length=150, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20835; Mature: 20835

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
6.8 %Met     (Mature Protein)
8.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYFLLLISAIFVNNIVLAQYLGQCPYLGCSKEKGVSLGMGGAVIFVMMLATPITWLLQK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FVLTPLHLDYLQTIMFILVIASLVQLVEMFLKKMVPPLYSSLGIFLPLITTNCAVLGVAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
LVQRKEFDLGTSVFYAFAAGLGFMLALVLLAGLRERLEITRVPRALAGVPVGLVMAGLMS
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
MAFMAFQGMIS
HHHHHHHHCCC
>Mature Secondary Structure
MDYFLLLISAIFVNNIVLAQYLGQCPYLGCSKEKGVSLGMGGAVIFVMMLATPITWLLQK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FVLTPLHLDYLQTIMFILVIASLVQLVEMFLKKMVPPLYSSLGIFLPLITTNCAVLGVAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
LVQRKEFDLGTSVFYAFAAGLGFMLALVLLAGLRERLEITRVPRALAGVPVGLVMAGLMS
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
MAFMAFQGMIS
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA