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The map label for this gene is rnfB [H]

Identifier: 78355633

GI number: 78355633

Start: 609489

End: 610358

Strand: Direct

Name: rnfB [H]

Synonym: Dde_0586

Alternate gene names: 78355633

Gene position: 609489-610358 (Clockwise)

Preceding gene: 78355632

Following gene: 78355634

Centisome position: 16.34

GC content: 59.89

Gene sequence:

>870_bases
ATGGTCGTAACATCCGTGCTTTCCCTGCTGGCGCTCGGTTTTGTCGCAGCCTGTGTGCTGGCGGCCGCTTCCCGGGTTTT
TTATGTAGAGGAAGATCCGCGCGTTGAAGCTGTGCTGGACGCCCTGCCGGGCGCTAACTGCGGCGGCTGCGGTTTTGCCG
GCTGTGAAGCGTATGCCCAGGCTGTGCTGGCCGATCCTTCGGTCAGTGCCGGGCTGTGCTGCGCAGGCGGTCCGGAAGTG
GCCCACAAGGTGGGTGAGCTTTCCGGCAAGGCCGCAGGCGATGATGAACCGCTGGTTTCTTTCCGGCGCTGTGTAAAAGA
TGAAGGTAAGGTGGCATCCCGTTACGGGTACGAGGGATTTGCATCCTGCACTGCCGCGGCAATGATCGAAGACGGCCCCG
ACGCGTGCCGTTTTTCGTGCATCGGCTACGGCGACTGCGTGCGCGGGTGCCCCTTTGACGCCATGTATATAGAAAACGGC
CTGGTGCATATTGACGAAGAAAAATGCACAAGCTGCGGCGCATGCATCCGCATCTGCCCGCGCAATATTCTGGAACTCAT
CCCGCGCCGTGCGCGTGTCATGGTTTACTGCTCAACGCAGGATAAAATGAAGGCCGTGATGAACGTGTGCGAAGCAGGCT
GCATCAACTGCGCAAAATGCGTCAAGAAGTGTCCGGCAAACGCCATAACGCAGGAAGGCGGCAAGATCATGATTGATCAG
AAAGCCTGCCTCGCGTTCGGGCCGGAATGCGGTGAAGCCTGTGTGGAAGCGTGCCCGCGCAACATTCTGCGCCATACATG
CCCCACAGCCAAAGTCAGGCTGGCCGAGCTGAAAGCGCAGGACGCGGCTCAGGATGAGGCTTCCGCCTGA

Upstream 100 bases:

>100_bases
GGCCTTCCAGGGCATGATTTCCTAGGGAAGTACCGGAACAAGGACAAGCCCTTTCCGCGGGAAATCCGCAAAGGAAAGGA
AAACAGACAAGGACAGCGAT

Downstream 100 bases:

>100_bases
GGGCGGCGGCAGGTTTACAACCGCGCCTGAAAAAGCGCGTGTGATACTTGGAGTCATTCCATGGAAAAAAATACCGCATC
CAGAAGACAGTTTATCCAGA

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MVVTSVLSLLALGFVAACVLAAASRVFYVEEDPRVEAVLDALPGANCGGCGFAGCEAYAQAVLADPSVSAGLCCAGGPEV
AHKVGELSGKAAGDDEPLVSFRRCVKDEGKVASRYGYEGFASCTAAAMIEDGPDACRFSCIGYGDCVRGCPFDAMYIENG
LVHIDEEKCTSCGACIRICPRNILELIPRRARVMVYCSTQDKMKAVMNVCEAGCINCAKCVKKCPANAITQEGGKIMIDQ
KACLAFGPECGEACVEACPRNILRHTCPTAKVRLAELKAQDAAQDEASA

Sequences:

>Translated_289_residues
MVVTSVLSLLALGFVAACVLAAASRVFYVEEDPRVEAVLDALPGANCGGCGFAGCEAYAQAVLADPSVSAGLCCAGGPEV
AHKVGELSGKAAGDDEPLVSFRRCVKDEGKVASRYGYEGFASCTAAAMIEDGPDACRFSCIGYGDCVRGCPFDAMYIENG
LVHIDEEKCTSCGACIRICPRNILELIPRRARVMVYCSTQDKMKAVMNVCEAGCINCAKCVKKCPANAITQEGGKIMIDQ
KACLAFGPECGEACVEACPRNILRHTCPTAKVRLAELKAQDAAQDEASA
>Mature_289_residues
MVVTSVLSLLALGFVAACVLAAASRVFYVEEDPRVEAVLDALPGANCGGCGFAGCEAYAQAVLADPSVSAGLCCAGGPEV
AHKVGELSGKAAGDDEPLVSFRRCVKDEGKVASRYGYEGFASCTAAAMIEDGPDACRFSCIGYGDCVRGCPFDAMYIENG
LVHIDEEKCTSCGACIRICPRNILELIPRRARVMVYCSTQDKMKAVMNVCEAGCINCAKCVKKCPANAITQEGGKIMIDQ
KACLAFGPECGEACVEACPRNILRHTCPTAKVRLAELKAQDAAQDEASA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=210, Percent_Identity=29.0476190476191, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 30294; Mature: 30294

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
11.8 %Cys+Met (Translated Protein)
9.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
11.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVTSVLSLLALGFVAACVLAAASRVFYVEEDPRVEAVLDALPGANCGGCGFAGCEAYAQ
CHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH
AVLADPSVSAGLCCAGGPEVAHKVGELSGKAAGDDEPLVSFRRCVKDEGKVASRYGYEGF
HHHCCCCCCCCEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCHH
ASCTAAAMIEDGPDACRFSCIGYGDCVRGCPFDAMYIENGLVHIDEEKCTSCGACIRICP
HHHHHHHHHCCCCCHHEEEEECCHHHHCCCCCCHHHHCCCCEEECHHHHHHHHHHHHHHH
RNILELIPRRARVMVYCSTQDKMKAVMNVCEAGCINCAKCVKKCPANAITQEGGKIMIDQ
HHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEC
KACLAFGPECGEACVEACPRNILRHTCPTAKVRLAELKAQDAAQDEASA
CHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVVTSVLSLLALGFVAACVLAAASRVFYVEEDPRVEAVLDALPGANCGGCGFAGCEAYAQ
CHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH
AVLADPSVSAGLCCAGGPEVAHKVGELSGKAAGDDEPLVSFRRCVKDEGKVASRYGYEGF
HHHCCCCCCCCEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCHH
ASCTAAAMIEDGPDACRFSCIGYGDCVRGCPFDAMYIENGLVHIDEEKCTSCGACIRICP
HHHHHHHHHCCCCCHHEEEEECCHHHHCCCCCCHHHHCCCCEEECHHHHHHHHHHHHHHH
RNILELIPRRARVMVYCSTQDKMKAVMNVCEAGCINCAKCVKKCPANAITQEGGKIMIDQ
HHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEC
KACLAFGPECGEACVEACPRNILRHTCPTAKVRLAELKAQDAAQDEASA
CHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA