| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is speA [H]
Identifier: 78355618
GI number: 78355618
Start: 595140
End: 597092
Strand: Direct
Name: speA [H]
Synonym: Dde_0571
Alternate gene names: 78355618
Gene position: 595140-597092 (Clockwise)
Preceding gene: 78355617
Following gene: 78355619
Centisome position: 15.95
GC content: 57.3
Gene sequence:
>1953_bases ATGAAACGGGGTATTTATGAGGATCAGAGATTGGCACGTAAGCACACTCTGCAACGGTGGAGCGCCGAAGACTCCGCCGA ACTCTATGGCATCCGCAACTGGGGTGCCGGGTACTTCGATGTTTCCGCCGAAGGCGACGTCGTGGTGTATCCTTTCGGGA GGTCGCATAAGCTGAACGTCAGCGTTCCGGACATCATCCGGGGCATGAAGGAGCGCGGGCTTGATATGCCTGTGCTGCTT CGCATCGAGAACATTCTCGAATCACGCATCTCCCTTCTTCACAAATCATTCCGCAACGCCATCGAATCGCTCGGTTATCA GGGCGGCTACCGGGGCGTTTTTCCCATCAAGGTCAATCAGCAGCAGCAGGTTATCGAAAAGATAGCCACATACGGCTCCA TGTACCATCACGGTCTGGAGGTCGGTTCCAAGGCGGAGCTTATCGCCGCCATCTCGCAGGCGCAGGATAAAGAAGCGTGC ATTGTCTGCAACGGGTACAAGGACGAGGAGTTCATTGACCTGGGGCTGCATGCCGTCCGCATGGGGTTCAAGTGCTTTTT TGTGCTTGAAATGCCGCGTGAGCTTGAGCTTATTCTGCGGCGTTCGCAGCAGATGGGTGTGCGTCCGCTTATCGGCACCC GTGTCAAGCTTGCCAGCAAGGCGGGCGGTCACTGGAGCGATTCCGGCGGCGAGCTGTCCACTTTCGGCCTGACCACGGCG CAGATAATGGACGTGGTGGACCGGCTGCAGAAAGAGGACATGCTCGACTGCTTCCGCCTGCTGCATTACCACCTCGGTTC GCAGGTGCCCAATATCCGCGATATCCGCAGTGCCGTAATGGAAGCCACCCGCGTTTATGCAGGTCTGGTGTCCGAAGGTG CCGCCATGGGCTATCTTGACCTGGGCGGCGGCCTTGCCGTGGATTACGACGGGTCGCATACCAATTTCGTTTCCAGCCGC AACTACACGCAGGACGAGTACTGCACGGACATTGTGGAAGCCGTCATGAGCATTCTGGACGAAACAGGTGTGCCGCATCC GCATATCATCACGGAATCCGGCCGGGCCACCGTGGCGTATTATTCCATGCTGCTTTTTAACATCCTTGATGTGAGCGGCG CCGAAGCCTTTCCCGACAATCTGCCGGATACACTGGATGAAAGTGAACCGGAAATGATCCGCAACCTGTTCGAGGCGTTC AGAGGGCTTACGCTGCGCAACCTGCAGGAATGCTATAACGACGCGTTGTACTACCGCGACGAAATCCGCCGTAATTTTCT GGACGGACGGGTGACGCTGCGTCAGCGCACGCTGGGCGAGCGGATTTTCTGGGCACTCATGCGGCGTGTGGCGGAGGAAA AAGATAAACTCCGTCATGTGCCCAAAGAACTTGCCGAGATAGACCGTGTACTGGCCGATGTCTATTACGGCAACTTCAGT GTGTTCCAGTCGCTGCCCGACTCTTGGGCCATCGAACAGCTGTTTCCTGTCATGCCGGTTCACAGGCTCAGGGAATTTCC CGACCGTCCGGCCATTCTTTCGGACATCACCTGTGACAGTGACGGACGCATAGACCGCTTCATCGATCCGCAAGGGGTGC GCAATACCATTGACCTGCATTCCCTTAACGGCGAGGAGTATTATCTGGGCGTCTTTCTGGTGGGCGCGTATCAGGAAACG CTGGGCGACCTGCACAACCTGCTGGGCGACACCAACGTGGTCAGCATCCGCGTGGAAGAGGACGGCAGCATTGAATACCG GCGTGAACTGCTTGGTGATTCCGTGGCCGATGTGCTTTCCAGCGTGGAATACGACCCGAGGCGCATCATGGAACAGCTGC GCGACACGGCGGAACAGGCAGTGCGCGAGGGGCGCATCACCCCTTCCGAAAGGTACGGCATTTTGCAGGCCTACGAAAAC GGTCTGCGCGGATACACCTATTTCGAACGATAG
Upstream 100 bases:
>100_bases GCCTGAATGGCAGGGTGCGGTGCGCGGCGTATATGCAGCCGGCAGCGCGCAGTATGGCAAAGGTCGGGCGCGCCCTGCGG GGCGGCCTGTGCAGGTAACA
Downstream 100 bases:
>100_bases AAGTGCACGCCGCATGATGCGGCTGCAAGGAGATGCCCTATGGCAAAAGTGCTCATTCTCGGCGCCGGCGGTGTCGGCTC TGTTGCCGCGCATAAATGCG
Product: arginine decarboxylase
Products: NA
Alternate protein names: ADC [H]
Number of amino acids: Translated: 650; Mature: 650
Protein sequence:
>650_residues MKRGIYEDQRLARKHTLQRWSAEDSAELYGIRNWGAGYFDVSAEGDVVVYPFGRSHKLNVSVPDIIRGMKERGLDMPVLL RIENILESRISLLHKSFRNAIESLGYQGGYRGVFPIKVNQQQQVIEKIATYGSMYHHGLEVGSKAELIAAISQAQDKEAC IVCNGYKDEEFIDLGLHAVRMGFKCFFVLEMPRELELILRRSQQMGVRPLIGTRVKLASKAGGHWSDSGGELSTFGLTTA QIMDVVDRLQKEDMLDCFRLLHYHLGSQVPNIRDIRSAVMEATRVYAGLVSEGAAMGYLDLGGGLAVDYDGSHTNFVSSR NYTQDEYCTDIVEAVMSILDETGVPHPHIITESGRATVAYYSMLLFNILDVSGAEAFPDNLPDTLDESEPEMIRNLFEAF RGLTLRNLQECYNDALYYRDEIRRNFLDGRVTLRQRTLGERIFWALMRRVAEEKDKLRHVPKELAEIDRVLADVYYGNFS VFQSLPDSWAIEQLFPVMPVHRLREFPDRPAILSDITCDSDGRIDRFIDPQGVRNTIDLHSLNGEEYYLGVFLVGAYQET LGDLHNLLGDTNVVSIRVEEDGSIEYRRELLGDSVADVLSSVEYDPRRIMEQLRDTAEQAVREGRITPSERYGILQAYEN GLRGYTYFER
Sequences:
>Translated_650_residues MKRGIYEDQRLARKHTLQRWSAEDSAELYGIRNWGAGYFDVSAEGDVVVYPFGRSHKLNVSVPDIIRGMKERGLDMPVLL RIENILESRISLLHKSFRNAIESLGYQGGYRGVFPIKVNQQQQVIEKIATYGSMYHHGLEVGSKAELIAAISQAQDKEAC IVCNGYKDEEFIDLGLHAVRMGFKCFFVLEMPRELELILRRSQQMGVRPLIGTRVKLASKAGGHWSDSGGELSTFGLTTA QIMDVVDRLQKEDMLDCFRLLHYHLGSQVPNIRDIRSAVMEATRVYAGLVSEGAAMGYLDLGGGLAVDYDGSHTNFVSSR NYTQDEYCTDIVEAVMSILDETGVPHPHIITESGRATVAYYSMLLFNILDVSGAEAFPDNLPDTLDESEPEMIRNLFEAF RGLTLRNLQECYNDALYYRDEIRRNFLDGRVTLRQRTLGERIFWALMRRVAEEKDKLRHVPKELAEIDRVLADVYYGNFS VFQSLPDSWAIEQLFPVMPVHRLREFPDRPAILSDITCDSDGRIDRFIDPQGVRNTIDLHSLNGEEYYLGVFLVGAYQET LGDLHNLLGDTNVVSIRVEEDGSIEYRRELLGDSVADVLSSVEYDPRRIMEQLRDTAEQAVREGRITPSERYGILQAYEN GLRGYTYFER >Mature_650_residues MKRGIYEDQRLARKHTLQRWSAEDSAELYGIRNWGAGYFDVSAEGDVVVYPFGRSHKLNVSVPDIIRGMKERGLDMPVLL RIENILESRISLLHKSFRNAIESLGYQGGYRGVFPIKVNQQQQVIEKIATYGSMYHHGLEVGSKAELIAAISQAQDKEAC IVCNGYKDEEFIDLGLHAVRMGFKCFFVLEMPRELELILRRSQQMGVRPLIGTRVKLASKAGGHWSDSGGELSTFGLTTA QIMDVVDRLQKEDMLDCFRLLHYHLGSQVPNIRDIRSAVMEATRVYAGLVSEGAAMGYLDLGGGLAVDYDGSHTNFVSSR NYTQDEYCTDIVEAVMSILDETGVPHPHIITESGRATVAYYSMLLFNILDVSGAEAFPDNLPDTLDESEPEMIRNLFEAF RGLTLRNLQECYNDALYYRDEIRRNFLDGRVTLRQRTLGERIFWALMRRVAEEKDKLRHVPKELAEIDRVLADVYYGNFS VFQSLPDSWAIEQLFPVMPVHRLREFPDRPAILSDITCDSDGRIDRFIDPQGVRNTIDLHSLNGEEYYLGVFLVGAYQET LGDLHNLLGDTNVVSIRVEEDGSIEYRRELLGDSVADVLSSVEYDPRRIMEQLRDTAEQAVREGRITPSERYGILQAYEN GLRGYTYFER
Specific function: Catalyzes the biosynthesis of agmatine from arginine [H]
COG id: COG1166
COG function: function code E; Arginine decarboxylase (spermidine biosynthesis)
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789307, Length=627, Percent_Identity=38.5964912280702, Blast_Score=449, Evalue=1e-127,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009006 - InterPro: IPR002985 - InterPro: IPR022643 - InterPro: IPR022644 - InterPro: IPR022653 - InterPro: IPR000183 [H]
Pfam domain/function: PF02784 Orn_Arg_deC_N; PF00278 Orn_DAP_Arg_deC [H]
EC number: =4.1.1.19 [H]
Molecular weight: Translated: 73918; Mature: 73918
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: PS00878 ODR_DC_2_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRGIYEDQRLARKHTLQRWSAEDSAELYGIRNWGAGYFDVSAEGDVVVYPFGRSHKLNV CCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCCCCEEEEECCCCCEECC SVPDIIRGMKERGLDMPVLLRIENILESRISLLHKSFRNAIESLGYQGGYRGVFPIKVNQ CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC QQQVIEKIATYGSMYHHGLEVGSKAELIAAISQAQDKEACIVCNGYKDEEFIDLGLHAVR HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH MGFKCFFVLEMPRELELILRRSQQMGVRPLIGTRVKLASKAGGHWSDSGGELSTFGLTTA HCCCEEEEEECCHHHHHHHHHHHHCCCCCHHCCHHHHHHCCCCCCCCCCCCEEECCCHHH QIMDVVDRLQKEDMLDCFRLLHYHLGSQVPNIRDIRSAVMEATRVYAGLVSEGAAMGYLD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE LGGGLAVDYDGSHTNFVSSRNYTQDEYCTDIVEAVMSILDETGVPHPHIITESGRATVAY CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHH YSMLLFNILDVSGAEAFPDNLPDTLDESEPEMIRNLFEAFRGLTLRNLQECYNDALYYRD HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH EIRRNFLDGRVTLRQRTLGERIFWALMRRVAEEKDKLRHVPKELAEIDRVLADVYYGNFS HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH VFQSLPDSWAIEQLFPVMPVHRLREFPDRPAILSDITCDSDGRIDRFIDPQGVRNTIDLH HHHHCCCCHHHHHHHHHCCHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEE SLNGEEYYLGVFLVGAYQETLGDLHNLLGDTNVVSIRVEEDGSIEYRRELLGDSVADVLS ECCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHH SVEYDPRRIMEQLRDTAEQAVREGRITPSERYGILQAYENGLRGYTYFER HCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKRGIYEDQRLARKHTLQRWSAEDSAELYGIRNWGAGYFDVSAEGDVVVYPFGRSHKLNV CCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCCCCEEEEECCCCCEECC SVPDIIRGMKERGLDMPVLLRIENILESRISLLHKSFRNAIESLGYQGGYRGVFPIKVNQ CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC QQQVIEKIATYGSMYHHGLEVGSKAELIAAISQAQDKEACIVCNGYKDEEFIDLGLHAVR HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH MGFKCFFVLEMPRELELILRRSQQMGVRPLIGTRVKLASKAGGHWSDSGGELSTFGLTTA HCCCEEEEEECCHHHHHHHHHHHHCCCCCHHCCHHHHHHCCCCCCCCCCCCEEECCCHHH QIMDVVDRLQKEDMLDCFRLLHYHLGSQVPNIRDIRSAVMEATRVYAGLVSEGAAMGYLD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE LGGGLAVDYDGSHTNFVSSRNYTQDEYCTDIVEAVMSILDETGVPHPHIITESGRATVAY CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHH YSMLLFNILDVSGAEAFPDNLPDTLDESEPEMIRNLFEAFRGLTLRNLQECYNDALYYRD HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH EIRRNFLDGRVTLRQRTLGERIFWALMRRVAEEKDKLRHVPKELAEIDRVLADVYYGNFS HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH VFQSLPDSWAIEQLFPVMPVHRLREFPDRPAILSDITCDSDGRIDRFIDPQGVRNTIDLH HHHHCCCCHHHHHHHHHCCHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEE SLNGEEYYLGVFLVGAYQETLGDLHNLLGDTNVVSIRVEEDGSIEYRRELLGDSVADVLS ECCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHH SVEYDPRRIMEQLRDTAEQAVREGRITPSERYGILQAYENGLRGYTYFER HCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 14621292 [H]