| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
Click here to switch to the map view.
The map label for this gene is 78355619
Identifier: 78355619
GI number: 78355619
Start: 597132
End: 598328
Strand: Direct
Name: 78355619
Synonym: Dde_0572
Alternate gene names: NA
Gene position: 597132-598328 (Clockwise)
Preceding gene: 78355618
Following gene: 78355620
Centisome position: 16.01
GC content: 56.06
Gene sequence:
>1197_bases ATGGCAAAAGTGCTCATTCTCGGCGCCGGCGGTGTCGGCTCTGTTGCCGCGCATAAATGCGCGCAGGCCCCGGAGATTTT TTCAGAAATCGTGCTGGCAAGCCGCACGGTCTCCAAATGCGTCGCCATTGCCGATTCCATCCGGCAGCGCACCGGCCGCA CCATAGAAACCGCTCAGGTGGATGCCGACAACGTGGCGGAAATGGTGCAGCTGATCAACGCGGTAAAGCCTGATCTGGTG GTGAACCTCGCCCTGCCGTATCAGGATCTGCCCGTCATGGATGCCTGCCTTGAAACCGGCGTCAATTATCTGGACACGGC CAACTACGAACCGCCGGACACTGCCCGTTTTGAATACAAGTGGCAGTGGGAGTATCAGGACCGCTTCAGGGAAAAAGGGC TCATGGCACTGCTGGGCAGCGGGTTTGATCCCGGTGTGACCAACGTGTTTGCCGCCCATGCCGTCAAGCACCATTTTGAC GAGATTCATGTTCTCGACATTATCGACTGCAATGCCGGTGATCACGGCTATCCTTTTGCCACCAATTTCAATCCGGAAAT CAATATCCGTGAAGTAACCGCCAGAGGGCGCTACTGGGAGCGCGGCGAATGGGTGGAGACCGATCCTCTTTCGTGGAGCA TGCAGTATGATTTCCCCGAGGGCATCGGCAGGAAAAAGTGCTTTCTCATGTATCACGAAGAGCTTGAGTCGCTGGTGCGC AACCTGCCCGGCATCAGGCGCGCCCGGTTCTGGATGACGTTTTCAGACAACTATCTCAACCACCTGAAGGTGCTTGAAAA TGTTGGTATGACCCGCATTGATCCCGTGCGCTATAACGGGCAGGACATTGTGCCGCTGCAGTTTCTCAAGGAACTGTTGC CCGATCCCGCATCGCTGGGCCCGCGTACCAAAGGCAAGACCTGCATCGGCAACGTGATGCACGGTGTCAAGGACGGCAAG GAAAAGAGCCTGTACGTATACAACGTGTGTGATCATGAAGAATGCTACCGCGAGGTAGGTTCTCAGGCCATTTCCTACAC CACCGGCGTGCCCGCGATGATAGGTGCCATGATGATGGTCACCGGCAAGTGGCAGGGCAGCGGCGTGTTTAACATGGAAC AGCTTGACCCTGACCCGTTCATGGAAGAGCTCAACAAGCGTGGTCTGCCGTGGAAAGAGGTTATCTTGAAAGGTTAG
Upstream 100 bases:
>100_bases GTACGGCATTTTGCAGGCCTACGAAAACGGTCTGCGCGGATACACCTATTTCGAACGATAGAAGTGCACGCCGCATGATG CGGCTGCAAGGAGATGCCCT
Downstream 100 bases:
>100_bases GCATCGGAAGGGTGCCCTCGCCGTGCTTTGTGGTGGACGAGGGCCTTCTGAGCCGGAATCTTGCCGTGCTGGACACGGTT CAGCAGCGCACCGGTGCCAG
Product: saccharopine dehydrogenase
Products: L-lysine; 2-oxoglutarate; NADH; H+
Alternate protein names: Carboxynorspermidine Dehydrogenase; Saccharopine Dehydrogenase-Like Protein; Saccharopine Dehydrogenase Family Protein; Acyl Carrier Protein; Carboxynorspermide Hydratase
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MAKVLILGAGGVGSVAAHKCAQAPEIFSEIVLASRTVSKCVAIADSIRQRTGRTIETAQVDADNVAEMVQLINAVKPDLV VNLALPYQDLPVMDACLETGVNYLDTANYEPPDTARFEYKWQWEYQDRFREKGLMALLGSGFDPGVTNVFAAHAVKHHFD EIHVLDIIDCNAGDHGYPFATNFNPEINIREVTARGRYWERGEWVETDPLSWSMQYDFPEGIGRKKCFLMYHEELESLVR NLPGIRRARFWMTFSDNYLNHLKVLENVGMTRIDPVRYNGQDIVPLQFLKELLPDPASLGPRTKGKTCIGNVMHGVKDGK EKSLYVYNVCDHEECYREVGSQAISYTTGVPAMIGAMMMVTGKWQGSGVFNMEQLDPDPFMEELNKRGLPWKEVILKG
Sequences:
>Translated_398_residues MAKVLILGAGGVGSVAAHKCAQAPEIFSEIVLASRTVSKCVAIADSIRQRTGRTIETAQVDADNVAEMVQLINAVKPDLV VNLALPYQDLPVMDACLETGVNYLDTANYEPPDTARFEYKWQWEYQDRFREKGLMALLGSGFDPGVTNVFAAHAVKHHFD EIHVLDIIDCNAGDHGYPFATNFNPEINIREVTARGRYWERGEWVETDPLSWSMQYDFPEGIGRKKCFLMYHEELESLVR NLPGIRRARFWMTFSDNYLNHLKVLENVGMTRIDPVRYNGQDIVPLQFLKELLPDPASLGPRTKGKTCIGNVMHGVKDGK EKSLYVYNVCDHEECYREVGSQAISYTTGVPAMIGAMMMVTGKWQGSGVFNMEQLDPDPFMEELNKRGLPWKEVILKG >Mature_397_residues AKVLILGAGGVGSVAAHKCAQAPEIFSEIVLASRTVSKCVAIADSIRQRTGRTIETAQVDADNVAEMVQLINAVKPDLVV NLALPYQDLPVMDACLETGVNYLDTANYEPPDTARFEYKWQWEYQDRFREKGLMALLGSGFDPGVTNVFAAHAVKHHFDE IHVLDIIDCNAGDHGYPFATNFNPEINIREVTARGRYWERGEWVETDPLSWSMQYDFPEGIGRKKCFLMYHEELESLVRN LPGIRRARFWMTFSDNYLNHLKVLENVGMTRIDPVRYNGQDIVPLQFLKELLPDPASLGPRTKGKTCIGNVMHGVKDGKE KSLYVYNVCDHEECYREVGSQAISYTTGVPAMIGAMMMVTGKWQGSGVFNMEQLDPDPFMEELNKRGLPWKEVILKG
Specific function: Unknown
COG id: COG1748
COG function: function code E; Saccharopine dehydrogenase and related proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.5.1.7
Molecular weight: Translated: 44819; Mature: 44688
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKVLILGAGGVGSVAAHKCAQAPEIFSEIVLASRTVSKCVAIADSIRQRTGRTIETAQV CCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC DADNVAEMVQLINAVKPDLVVNLALPYQDLPVMDACLETGVNYLDTANYEPPDTARFEYK CHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCEEEEE WQWEYQDRFREKGLMALLGSGFDPGVTNVFAAHAVKHHFDEIHVLDIIDCNAGDHGYPFA EEECHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC TNFNPEINIREVTARGRYWERGEWVETDPLSWSMQYDFPEGIGRKKCFLMYHEELESLVR CCCCCCCEEEEEEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCEEEHHHHHHHHHHH NLPGIRRARFWMTFSDNYLNHLKVLENVGMTRIDPVRYNGQDIVPLQFLKELLPDPASLG HCCCCEEEEEEEEECHHHHHHHHHHHHCCCCEECCEEECCCCCCHHHHHHHHCCCCCCCC PRTKGKTCIGNVMHGVKDGKEKSLYVYNVCDHEECYREVGSQAISYTTGVPAMIGAMMMV CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH TGKWQGSGVFNMEQLDPDPFMEELNKRGLPWKEVILKG CCCCCCCCCEEHHHCCCCHHHHHHHHCCCCHHHHHCCC >Mature Secondary Structure AKVLILGAGGVGSVAAHKCAQAPEIFSEIVLASRTVSKCVAIADSIRQRTGRTIETAQV CEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC DADNVAEMVQLINAVKPDLVVNLALPYQDLPVMDACLETGVNYLDTANYEPPDTARFEYK CHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCEEEEE WQWEYQDRFREKGLMALLGSGFDPGVTNVFAAHAVKHHFDEIHVLDIIDCNAGDHGYPFA EEECHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC TNFNPEINIREVTARGRYWERGEWVETDPLSWSMQYDFPEGIGRKKCFLMYHEELESLVR CCCCCCCEEEEEEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCEEEHHHHHHHHHHH NLPGIRRARFWMTFSDNYLNHLKVLENVGMTRIDPVRYNGQDIVPLQFLKELLPDPASLG HCCCCEEEEEEEEECHHHHHHHHHHHHCCCCEECCEEECCCCCCHHHHHHHHCCCCCCCC PRTKGKTCIGNVMHGVKDGKEKSLYVYNVCDHEECYREVGSQAISYTTGVPAMIGAMMMV CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH TGKWQGSGVFNMEQLDPDPFMEELNKRGLPWKEVILKG CCCCCCCCCEEHHHCCCCHHHHHHHHCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: N6-(L-1,3-dicarboxypropyl)-L-lysine; NAD+; H2O
Specific reaction: N6-(L-1,3-dicarboxypropyl)-L-lysine + NAD+ + H2O = L-lysine + 2-oxoglutarate + NADH + H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA