| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is comEC [H]
Identifier: 78355594
GI number: 78355594
Start: 561796
End: 564498
Strand: Direct
Name: comEC [H]
Synonym: Dde_0547
Alternate gene names: 78355594
Gene position: 561796-564498 (Clockwise)
Preceding gene: 78355593
Following gene: 78355597
Centisome position: 15.06
GC content: 65.52
Gene sequence:
>2703_bases ATGACACGCAGCACACCCCCGCAAACCGCACAGGGCGGTCCCCCCGCCGGTTACAACCGCAGTGCCGCCCTGCTGCCGCA CGGCGCGCCACCTGCACTGTTGTGGCGTCAATGGTGCCTGCTGGCTGTGCTGGCCGGTCTGGCGGCAGGAGAAACGGGCC TGCGGGACGCTGCCCCGGCGTGGGGGGCGGCAGTGCTGGTATTTATGGTGCTGTGGTCCGGTCGTCAGAATGCGGGCAGG CCTGCCGCGGTTTTGCGTGCGCTGGTGCTGGGGGTATGCATGGCTGCCGGTGTCTGCTTTATGCTGCTGCACCGCCAGCC CGCTGCGGAAGTGCCCGGCTGGATGACCGCGCAGGAAAAGGTGCGGGTGCAGGGGGTGGTGCAGATTGTGGAAAGCCGTC CTGAAGGACGGCTGCGGATGGTGCTGGCAGATGCGCGCTGCCGCACGGCGCAAGGCTGGCAGACGTTGAAGGCTGATGTG GTCTGGACATGGCAGTATCCTGTTTTTCGGCCCCGCAGCGGCAGTACAGTGGAATTTGAAGGCAGAGTGAAGCCGGTACG CGGTTTTCTGAACCGCGGAACATGGGACAGCGGAAGCTTCTGGCTGCGCAACGGGGTAGGGTACAGAGTCTGGACACGGG CAGAGCAGGGACAGGTGCATGAGGTGCCTGCCGGTAAGCCCGCAGCGGAGTCAGCCTTGTTCCAGAGTGATGCGCTGCAG TCCGCAGAGGTGATGCGGGGCCTGCGCAGTCTTGTGCTGCAGCGGGTGGAACGGGTGCTGGCGGGCATGTCTGACCCGAT ACCGGCAGATGCGGACGGGCAGGGGGCTTTGCGGCAGATGCCGCGCTGGCGTGACCTGCCTCAGCGGTATGCCGTGCTGC CAGCTCTGCTGCTCGGAGAGCGTTTTTACCTTTCACAGCAGACGATGGACAGGCTGGCCGATGCGGGGTTGATGCACAGC TTTGCTCTTTCCGGCATGCATCTGGGGCTGGCGGCAGCGCTGGGTGCGTTGGCGGCGCTGCTGGCCGGCAGAATTTTTCC CGGACTGTACCTTGTGGTGCCGCGGCAGCAGCTGGCCGTACTGTGTGCCGCACCGCCGGTGCTCGGGTATGTCTGGCTGG GCGGCGCCACGCCTTCACTGCTGCGGGCGGCGCTGATGTTTGCCTTCTGGGGCGGGTTGCTGCTGGCCGGCAGGCGCGGA GTACTGACAGACGGGCTGTTGTGGGCCGTGGCGGTAGTGGTTGCATGGCAGCCGCAGGCTCTGTTTGATCTGCGGCTGCA GCTTTCTGCCGTGGCCGTGGCGGGCATTGCCTGCACCATGCCTGTGTACCGTGCTGCGGCGGGCAGGCTCGGCACCAAGC ATGGCACGGCTGCCGGTGCTGTCATGCGCCTGACGGGGGGGCTTGCCGGAGTGCTGGCTGTAAGCATGGCTGCCCAGCTG GCCCTTATGCCTCTCACGCTGGATGCGTTCGGCAGTGTGACGCCGTGGTTTGTGCTTAATGTCCTGTGGCTGCCCGCGCT GGGGCTGTGGGTGCTGCCGCTGGCCTTTGCCGGGCTTGTGTCGCTGGCCCTGCCGCAGGCTGCCCCTGTTGCCGTGTGGC TGTTCCATGTTGCCACAGTGCCGGTGGAATGGTTGCTGGAGATGCTGGGCACACTGGAGGCCGGCGGACTGCTTTATCCG GTGTTGTCTGTAAGACCGCTGCCCTGCGCTGCTGCGGGGTTCTGGATGCTGTTGGGTACGGCATGCCTGCTGTGGCGGGG AACCGCCGGTCCTGCCGTGCAGCAGAGCGGCCGCAGCGTTCTGCTGCCGTATGGTCTGCGCGCTGTCTGCGTGACGGTGA CTGCAGGGGTGGTGCTGCTTGCCGCGCCGGTGTGTCTGCGTTTTTCCGCGTACCTGCAGGATGATGTTTCTGTTTCCGTG CTGGATGTGGGGCAGGGGCAGGCCGTGCTGGTGGAGGCGCCGCACGGAGTGCGCGTTCTTATTGACGGCGGGGGGTTTCC TTCGTCTTCTTTTGACACGGGCAAGGCACTGGTGGCACCCGTGCTGACGTATAACAGACCGCCGGTGCTTTCCGCCGTGG TCAACACCCATCCGGACAGTGATCATCTGGGCGGCTTGCCGTTTATTCTGCAGTCTTTTGACGTGGGCGCCTTTTATACC AACGGCGAGCTGCCGCAGGAGGGGGCGCATGCGGCTGCTCTGGAACGGGCATGGCGGGCCGGTGCTCCCGTGCCTGCGGT TCTGGCTGCCGGTGATTCGCTGTTGCTGGGCAGCACCGCGGAACTGCAGGTGCTTGCACCGGAGGCCGGACGCATGACGG GCAATACCAATGACAATTCGCTGATTCTGCGGTTGACGCGCGGTGGCAGAGGGCTGGCGCTGGTGCCCGCCGATGCGGGT ACCGTAGTGCTTGACCGGCTGGCGCAGGCGGCGCGGCGGCAGAATACTCCGGTGGAAGCCGCGTTGCTTGTGGTGCCGCA TCACGGCAGCGGAAACAGCCTCTCTCCCCTTCTGTACGATGCGGTTGCGCCCTCTCTTGCAGTGGCTTCGTGCGGATACA TGAACTACTGGCGGTTTCCGCGTCCTGAAGTGCGCGGGGCGCTGGAGGCGCGTGGAATTCCGCTGCTTACAACGTCCGGA AGCGGACAGATTACCGTGTGCTGGCCGGACAGCGGACATATGCAGGTACGCAGTGTGCGCTGA
Upstream 100 bases:
>100_bases CGCGGATATCAGGCGCGTGCCTGAATAGCATGTCTGCCATGTTTGTAACGCCTCCGGCTGTGCCGGAGGCGTTTTTTCTT GTCCGCACGCAAGGTGAAGC
Downstream 100 bases:
>100_bases CCGTCCTGCCGCCGGGGCTGAGCTGTTGCGGTGCCGTGTATGCGCTTACGGTGGCCGGAACAGCATGACGGCCGGAACAG GTAACTGTTCCGCCCGTCAT
Product: ComEC/Rec2-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 900; Mature: 899
Protein sequence:
>900_residues MTRSTPPQTAQGGPPAGYNRSAALLPHGAPPALLWRQWCLLAVLAGLAAGETGLRDAAPAWGAAVLVFMVLWSGRQNAGR PAAVLRALVLGVCMAAGVCFMLLHRQPAAEVPGWMTAQEKVRVQGVVQIVESRPEGRLRMVLADARCRTAQGWQTLKADV VWTWQYPVFRPRSGSTVEFEGRVKPVRGFLNRGTWDSGSFWLRNGVGYRVWTRAEQGQVHEVPAGKPAAESALFQSDALQ SAEVMRGLRSLVLQRVERVLAGMSDPIPADADGQGALRQMPRWRDLPQRYAVLPALLLGERFYLSQQTMDRLADAGLMHS FALSGMHLGLAAALGALAALLAGRIFPGLYLVVPRQQLAVLCAAPPVLGYVWLGGATPSLLRAALMFAFWGGLLLAGRRG VLTDGLLWAVAVVVAWQPQALFDLRLQLSAVAVAGIACTMPVYRAAAGRLGTKHGTAAGAVMRLTGGLAGVLAVSMAAQL ALMPLTLDAFGSVTPWFVLNVLWLPALGLWVLPLAFAGLVSLALPQAAPVAVWLFHVATVPVEWLLEMLGTLEAGGLLYP VLSVRPLPCAAAGFWMLLGTACLLWRGTAGPAVQQSGRSVLLPYGLRAVCVTVTAGVVLLAAPVCLRFSAYLQDDVSVSV LDVGQGQAVLVEAPHGVRVLIDGGGFPSSSFDTGKALVAPVLTYNRPPVLSAVVNTHPDSDHLGGLPFILQSFDVGAFYT NGELPQEGAHAAALERAWRAGAPVPAVLAAGDSLLLGSTAELQVLAPEAGRMTGNTNDNSLILRLTRGGRGLALVPADAG TVVLDRLAQAARRQNTPVEAALLVVPHHGSGNSLSPLLYDAVAPSLAVASCGYMNYWRFPRPEVRGALEARGIPLLTTSG SGQITVCWPDSGHMQVRSVR
Sequences:
>Translated_900_residues MTRSTPPQTAQGGPPAGYNRSAALLPHGAPPALLWRQWCLLAVLAGLAAGETGLRDAAPAWGAAVLVFMVLWSGRQNAGR PAAVLRALVLGVCMAAGVCFMLLHRQPAAEVPGWMTAQEKVRVQGVVQIVESRPEGRLRMVLADARCRTAQGWQTLKADV VWTWQYPVFRPRSGSTVEFEGRVKPVRGFLNRGTWDSGSFWLRNGVGYRVWTRAEQGQVHEVPAGKPAAESALFQSDALQ SAEVMRGLRSLVLQRVERVLAGMSDPIPADADGQGALRQMPRWRDLPQRYAVLPALLLGERFYLSQQTMDRLADAGLMHS FALSGMHLGLAAALGALAALLAGRIFPGLYLVVPRQQLAVLCAAPPVLGYVWLGGATPSLLRAALMFAFWGGLLLAGRRG VLTDGLLWAVAVVVAWQPQALFDLRLQLSAVAVAGIACTMPVYRAAAGRLGTKHGTAAGAVMRLTGGLAGVLAVSMAAQL ALMPLTLDAFGSVTPWFVLNVLWLPALGLWVLPLAFAGLVSLALPQAAPVAVWLFHVATVPVEWLLEMLGTLEAGGLLYP VLSVRPLPCAAAGFWMLLGTACLLWRGTAGPAVQQSGRSVLLPYGLRAVCVTVTAGVVLLAAPVCLRFSAYLQDDVSVSV LDVGQGQAVLVEAPHGVRVLIDGGGFPSSSFDTGKALVAPVLTYNRPPVLSAVVNTHPDSDHLGGLPFILQSFDVGAFYT NGELPQEGAHAAALERAWRAGAPVPAVLAAGDSLLLGSTAELQVLAPEAGRMTGNTNDNSLILRLTRGGRGLALVPADAG TVVLDRLAQAARRQNTPVEAALLVVPHHGSGNSLSPLLYDAVAPSLAVASCGYMNYWRFPRPEVRGALEARGIPLLTTSG SGQITVCWPDSGHMQVRSVR >Mature_899_residues TRSTPPQTAQGGPPAGYNRSAALLPHGAPPALLWRQWCLLAVLAGLAAGETGLRDAAPAWGAAVLVFMVLWSGRQNAGRP AAVLRALVLGVCMAAGVCFMLLHRQPAAEVPGWMTAQEKVRVQGVVQIVESRPEGRLRMVLADARCRTAQGWQTLKADVV WTWQYPVFRPRSGSTVEFEGRVKPVRGFLNRGTWDSGSFWLRNGVGYRVWTRAEQGQVHEVPAGKPAAESALFQSDALQS AEVMRGLRSLVLQRVERVLAGMSDPIPADADGQGALRQMPRWRDLPQRYAVLPALLLGERFYLSQQTMDRLADAGLMHSF ALSGMHLGLAAALGALAALLAGRIFPGLYLVVPRQQLAVLCAAPPVLGYVWLGGATPSLLRAALMFAFWGGLLLAGRRGV LTDGLLWAVAVVVAWQPQALFDLRLQLSAVAVAGIACTMPVYRAAAGRLGTKHGTAAGAVMRLTGGLAGVLAVSMAAQLA LMPLTLDAFGSVTPWFVLNVLWLPALGLWVLPLAFAGLVSLALPQAAPVAVWLFHVATVPVEWLLEMLGTLEAGGLLYPV LSVRPLPCAAAGFWMLLGTACLLWRGTAGPAVQQSGRSVLLPYGLRAVCVTVTAGVVLLAAPVCLRFSAYLQDDVSVSVL DVGQGQAVLVEAPHGVRVLIDGGGFPSSSFDTGKALVAPVLTYNRPPVLSAVVNTHPDSDHLGGLPFILQSFDVGAFYTN GELPQEGAHAAALERAWRAGAPVPAVLAAGDSLLLGSTAELQVLAPEAGRMTGNTNDNSLILRLTRGGRGLALVPADAGT VVLDRLAQAARRQNTPVEAALLVVPHHGSGNSLSPLLYDAVAPSLAVASCGYMNYWRFPRPEVRGALEARGIPLLTTSGS GQITVCWPDSGHMQVRSVR
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=622, Percent_Identity=26.8488745980707, Blast_Score=113, Evalue=7e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 95091; Mature: 94960
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: PS00732 RIBOSOMAL_S16
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRSTPPQTAQGGPPAGYNRSAALLPHGAPPALLWRQWCLLAVLAGLAAGETGLRDAAPA CCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH WGAAVLVFMVLWSGRQNAGRPAAVLRALVLGVCMAAGVCFMLLHRQPAAEVPGWMTAQEK HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHH VRVQGVVQIVESRPEGRLRMVLADARCRTAQGWQTLKADVVWTWQYPVFRPRSGSTVEFE HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCEECCCCCCEEEEC GRVKPVRGFLNRGTWDSGSFWLRNGVGYRVWTRAEQGQVHEVPAGKPAAESALFQSDALQ CCCHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHH SAEVMRGLRSLVLQRVERVLAGMSDPIPADADGQGALRQMPRWRDLPQRYAVLPALLLGE HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHCCHHHHHHHHHHHHCC RFYLSQQTMDRLADAGLMHSFALSGMHLGLAAALGALAALLAGRIFPGLYLVVPRQQLAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHH LCAAPPVLGYVWLGGATPSLLRAALMFAFWGGLLLAGRRGVLTDGLLWAVAVVVAWQPQA HHCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH LFDLRLQLSAVAVAGIACTMPVYRAAAGRLGTKHGTAAGAVMRLTGGLAGVLAVSMAAQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ALMPLTLDAFGSVTPWFVLNVLWLPALGLWVLPLAFAGLVSLALPQAAPVAVWLFHVATV HHHEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC PVEWLLEMLGTLEAGGLLYPVLSVRPLPCAAAGFWMLLGTACLLWRGTAGPAVQQSGRSV CHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEE LLPYGLRAVCVTVTAGVVLLAAPVCLRFSAYLQDDVSVSVLDVGQGQAVLVEAPHGVRVL EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCEEEE IDGGGFPSSSFDTGKALVAPVLTYNRPPVLSAVVNTHPDSDHLGGLPFILQSFDVGAFYT EECCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEE NGELPQEGAHAAALERAWRAGAPVPAVLAAGDSLLLGSTAELQVLAPEAGRMTGNTNDNS CCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCEEECCCCCEEEECCCCCCCCCCCCCCE LILRLTRGGRGLALVPADAGTVVLDRLAQAARRQNTPVEAALLVVPHHGSGNSLSPLLYD EEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHH AVAPSLAVASCGYMNYWRFPRPEVRGALEARGIPLLTTSGSGQITVCWPDSGHMQVRSVR HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCEEEEECC >Mature Secondary Structure TRSTPPQTAQGGPPAGYNRSAALLPHGAPPALLWRQWCLLAVLAGLAAGETGLRDAAPA CCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH WGAAVLVFMVLWSGRQNAGRPAAVLRALVLGVCMAAGVCFMLLHRQPAAEVPGWMTAQEK HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHH VRVQGVVQIVESRPEGRLRMVLADARCRTAQGWQTLKADVVWTWQYPVFRPRSGSTVEFE HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCEECCCCCCEEEEC GRVKPVRGFLNRGTWDSGSFWLRNGVGYRVWTRAEQGQVHEVPAGKPAAESALFQSDALQ CCCHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHH SAEVMRGLRSLVLQRVERVLAGMSDPIPADADGQGALRQMPRWRDLPQRYAVLPALLLGE HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHCCHHHHHHHHHHHHCC RFYLSQQTMDRLADAGLMHSFALSGMHLGLAAALGALAALLAGRIFPGLYLVVPRQQLAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHH LCAAPPVLGYVWLGGATPSLLRAALMFAFWGGLLLAGRRGVLTDGLLWAVAVVVAWQPQA HHCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH LFDLRLQLSAVAVAGIACTMPVYRAAAGRLGTKHGTAAGAVMRLTGGLAGVLAVSMAAQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ALMPLTLDAFGSVTPWFVLNVLWLPALGLWVLPLAFAGLVSLALPQAAPVAVWLFHVATV HHHEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC PVEWLLEMLGTLEAGGLLYPVLSVRPLPCAAAGFWMLLGTACLLWRGTAGPAVQQSGRSV CHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEE LLPYGLRAVCVTVTAGVVLLAAPVCLRFSAYLQDDVSVSVLDVGQGQAVLVEAPHGVRVL EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCEEEE IDGGGFPSSSFDTGKALVAPVLTYNRPPVLSAVVNTHPDSDHLGGLPFILQSFDVGAFYT EECCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEE NGELPQEGAHAAALERAWRAGAPVPAVLAAGDSLLLGSTAELQVLAPEAGRMTGNTNDNS CCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCEEECCCCCEEEECCCCCCCCCCCCCCE LILRLTRGGRGLALVPADAGTVVLDRLAQAARRQNTPVEAALLVVPHHGSGNSLSPLLYD EEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHH AVAPSLAVASCGYMNYWRFPRPEVRGALEARGIPLLTTSGSGQITVCWPDSGHMQVRSVR HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]