Click here to switch to the map view.

The map label for this gene is ihfA [H]

Identifier: 78355564

GI number: 78355564

Start: 524929

End: 525222

Strand: Direct

Name: ihfA [H]

Synonym: Dde_0517

Alternate gene names: 78355564

Gene position: 524929-525222 (Clockwise)

Preceding gene: 78355561

Following gene: 78355573

Centisome position: 14.07

GC content: 51.36

Gene sequence:

>294_bases
ATGAGTGGTAAGACCTTGACCAAGGCTGACATCGTTGATGCCATTTACGAAAAGACCGAAAGAAACCGCGCTGAAGTGAA
GAACGTGGTTGAATCCCTTCTGGGAATCATGAAGCAGGCCATTAAAAAAGATCATGCCCTGCTGATCAGCGGGTTCGGTA
AATTCGAAGCATACGACAAAAAAGCCCGCAAGGGCCGTAACCCGCAGACGGATGAAACCATTACCCTGCCTCCGCGCAAG
GTTGTGGTGTTCCGCCTGTCGCGCAAATTCCGTGCAGAGCTGAACGGCGAATAG

Upstream 100 bases:

>100_bases
TGTCATATATGACGCACCGGGGCACTGTGCTTTTTTGTGTGTACCAGGGACGCGAACACTGAAAGGAAACACCCGGCCGA
CCGGGTACAGGAGGGATACC

Downstream 100 bases:

>100_bases
CATTGCGCACTCCGTCCGGATGAGAAGCCGCCCGCTGCAGAGCAGGGGCGGCTTTTCTTGTTTTGCCGTGTGCTGCGGGG
TTAGTGTCTGCCTGTGGTTT

Product: histone-like DNA-binding protein

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MSGKTLTKADIVDAIYEKTERNRAEVKNVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARKGRNPQTDETITLPPRK
VVVFRLSRKFRAELNGE

Sequences:

>Translated_97_residues
MSGKTLTKADIVDAIYEKTERNRAEVKNVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARKGRNPQTDETITLPPRK
VVVFRLSRKFRAELNGE
>Mature_96_residues
SGKTLTKADIVDAIYEKTERNRAEVKNVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARKGRNPQTDETITLPPRKV
VVFRLSRKFRAELNGE

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=88, Percent_Identity=34.0909090909091, Blast_Score=62, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11005; Mature: 10874

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKTLTKADIVDAIYEKTERNRAEVKNVVESLLGIMKQAIKKDHALLISGFGKFEAYDK
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHH
KARKGRNPQTDETITLPPRKVVVFRLSRKFRAELNGE
HHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SGKTLTKADIVDAIYEKTERNRAEVKNVVESLLGIMKQAIKKDHALLISGFGKFEAYDK
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHH
KARKGRNPQTDETITLPPRKVVVFRLSRKFRAELNGE
HHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA