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The map label for this gene is tnpA1 [H]

Identifier: 78355524

GI number: 78355524

Start: 487087

End: 487497

Strand: Direct

Name: tnpA1 [H]

Synonym: Dde_0477

Alternate gene names: 78355524

Gene position: 487087-487497 (Clockwise)

Preceding gene: 78355523

Following gene: 78355525

Centisome position: 13.06

GC content: 41.61

Gene sequence:

>411_bases
GTGGCAAATCAAAAGGAGGTCACAATGGGTGACGCTAAGAGTTTAGCCCACACAAAATGGAACTGCAAATATCACGTAGT
GTTTGCGCCAAAGTATCGGCGGCAAGTTTTTTACGGGGAGAAGAAGCGCGCAGTGGGTGAGATATTGCGCAAACTGTGTG
AGTGGAAAGGCGTACATATAGTCGAAGCAGAATGCTGCCCCGATCATGTACATATGCTTCTTGAAATACCGCCAAAGATG
AGTGTTTCAAGTTTTATGGGATACTTGAAAGGAAAAAGCAGTTTAATGTTGTATGATCAATTTGGCGATCTGAAGTTTAA
ATACCGGAATCGCGAGTTTTGGTGCCGTGGATATTATGTAGATACAGTTGGAAAAAACAAGGCAAAGATACAAGATTACA
TTAAGCATTAA

Upstream 100 bases:

>100_bases
CCCCCGCTAGGCGGGGGGGTCCGTAAAGCTTAAAGCTATAGAGATATTAGTAAAACTCCTTTTGATTTGCTAATTAATCC
CTGCGGTCTGGCAACTGCAG

Downstream 100 bases:

>100_bases
CTTGAGCATGATAAGCTCGGTGATCAATTATCCCTTCCATATTCTGGAAACCCGTTTACGGGTCGCAAGTAACAGAAATG
CAGATGCCAGACGAACGTGC

Product: transposase for IS200

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MANQKEVTMGDAKSLAHTKWNCKYHVVFAPKYRRQVFYGEKKRAVGEILRKLCEWKGVHIVEAECCPDHVHMLLEIPPKM
SVSSFMGYLKGKSSLMLYDQFGDLKFKYRNREFWCRGYYVDTVGKNKAKIQDYIKH

Sequences:

>Translated_136_residues
MANQKEVTMGDAKSLAHTKWNCKYHVVFAPKYRRQVFYGEKKRAVGEILRKLCEWKGVHIVEAECCPDHVHMLLEIPPKM
SVSSFMGYLKGKSSLMLYDQFGDLKFKYRNREFWCRGYYVDTVGKNKAKIQDYIKH
>Mature_135_residues
ANQKEVTMGDAKSLAHTKWNCKYHVVFAPKYRRQVFYGEKKRAVGEILRKLCEWKGVHIVEAECCPDHVHMLLEIPPKMS
VSSFMGYLKGKSSLMLYDQFGDLKFKYRNREFWCRGYYVDTVGKNKAKIQDYIKH

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 16047; Mature: 15916

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANQKEVTMGDAKSLAHTKWNCKYHVVFAPKYRRQVFYGEKKRAVGEILRKLCEWKGVHI
CCCCCCCCCCCCHHHHCCCCCCEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHCCCCCEE
VEAECCPDHVHMLLEIPPKMSVSSFMGYLKGKSSLMLYDQFGDLKFKYRNREFWCRGYYV
EECCCCCCHHEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCEEEEEECCEEEEEEEEE
DTVGKNKAKIQDYIKH
ECCCCCHHHHHHHHCC
>Mature Secondary Structure 
ANQKEVTMGDAKSLAHTKWNCKYHVVFAPKYRRQVFYGEKKRAVGEILRKLCEWKGVHI
CCCCCCCCCCCHHHHCCCCCCEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHCCCCCEE
VEAECCPDHVHMLLEIPPKMSVSSFMGYLKGKSSLMLYDQFGDLKFKYRNREFWCRGYYV
EECCCCCCHHEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCEEEEEECCEEEEEEEEE
DTVGKNKAKIQDYIKH
ECCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]