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The map label for this gene is lsrR [H]

Identifier: 78355454

GI number: 78355454

Start: 401530

End: 402495

Strand: Direct

Name: lsrR [H]

Synonym: Dde_0407

Alternate gene names: 78355454

Gene position: 401530-402495 (Clockwise)

Preceding gene: 78355446

Following gene: 78355455

Centisome position: 10.76

GC content: 61.18

Gene sequence:

>966_bases
ATGTCCGGATATTCGCATGAAGAACGCGAACTGCTGAGCAGGATTGCATGGGCGTACCATGTGAACGGCATGACGCAGGC
CGAGGTGGCCGACTGGCTGGGCGTGAGCAGAGCACGGGTTGTCCGGCTGCTGCAGGTCTGCCGCGACGAGGGGTTTGTCC
AGATTATCGTCAATACGGACAGAGCCGTGTGCAATGAACTGGAGCGGCAGCTCGAGGCTGCATTCGGTCTCCGGCGGGCC
ATCGTCATTCCTGCCCCTGCCAATCCGCGGCAGCTTAACCATAATCTGGGACAGGCGGCGGCGCATTATCTTTCGGGCGC
TCTGCGCGACGGTAATTCGCTGGGGCTGGGCTGGGGCACCACCGTGGCCGCTGCGGCCTCATCCGTGCCGGTGGAGCCGG
CGCAGGGGCTTACCGTCGTTTCCATGTACGGCGGGCTGCCCTACAGCATTGTGGTCAATCCTTATGAAATCGTGACAACG
TTTTCGCGCAGGCTGAAAGCCTCGCAAACCTACTATATCGCGGCGCCCATGTTTGCGCCCAGTCCAGAGTCCTGCCGGCT
CCTGAAATCACAGGAACTGTTCCGGTCTGTCTATGCACGCGCCATACAGGTTGATATCGCCCTCATCGGTCTGGGTGAAC
TGGCGGTGAACGCGACCAACATCGTTCTGGGCGCCATCACCCGCGAAGACTTCCGCTCGCTGGTGGATGCCGGTGCCGTG
GGCGAAGTGTTCGGTGCGTTTGTGGATGCCGCAGGCCAACCGGTGGATCATCCCAAGAACCATTGTTTCATGGGGCCCAC
TCTGGAAGAGGTGCGCAGCATTCCGTTGCGCATTGCCGCGGCGGGCGGTCCCAGCAAAACGGCCATCCTCAGAGCTGCTC
TGGTGGGCGGCTTTGCAGATGTGCTTGTGACGGACGAAACCACGGCAGGGACGCTGCTTATGGCAGAAACCGGAGGTGAA
TCATGA

Upstream 100 bases:

>100_bases
AACCAAGGGCTTTTTTCATGCCGTTTGTACACTCACTCAATGTCTGTTGCAGGTCGCAAGGCATGCCTTGCGGCCGGCAT
ACGCATAAGGCTGGTGGACG

Downstream 100 bases:

>100_bases
AAAGAGAAGAATTACTGGACCGCCTGAAGGCCGATAAGGAATTCGACCTGCTTGTTGTCGGCGGCGGAGCCACCGGCTGC
GGCGTTGCGCTGGACGCAGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MSGYSHEERELLSRIAWAYHVNGMTQAEVADWLGVSRARVVRLLQVCRDEGFVQIIVNTDRAVCNELERQLEAAFGLRRA
IVIPAPANPRQLNHNLGQAAAHYLSGALRDGNSLGLGWGTTVAAAASSVPVEPAQGLTVVSMYGGLPYSIVVNPYEIVTT
FSRRLKASQTYYIAAPMFAPSPESCRLLKSQELFRSVYARAIQVDIALIGLGELAVNATNIVLGAITREDFRSLVDAGAV
GEVFGAFVDAAGQPVDHPKNHCFMGPTLEEVRSIPLRIAAAGGPSKTAILRAALVGGFADVLVTDETTAGTLLMAETGGE
S

Sequences:

>Translated_321_residues
MSGYSHEERELLSRIAWAYHVNGMTQAEVADWLGVSRARVVRLLQVCRDEGFVQIIVNTDRAVCNELERQLEAAFGLRRA
IVIPAPANPRQLNHNLGQAAAHYLSGALRDGNSLGLGWGTTVAAAASSVPVEPAQGLTVVSMYGGLPYSIVVNPYEIVTT
FSRRLKASQTYYIAAPMFAPSPESCRLLKSQELFRSVYARAIQVDIALIGLGELAVNATNIVLGAITREDFRSLVDAGAV
GEVFGAFVDAAGQPVDHPKNHCFMGPTLEEVRSIPLRIAAAGGPSKTAILRAALVGGFADVLVTDETTAGTLLMAETGGE
S
>Mature_320_residues
SGYSHEERELLSRIAWAYHVNGMTQAEVADWLGVSRARVVRLLQVCRDEGFVQIIVNTDRAVCNELERQLEAAFGLRRAI
VIPAPANPRQLNHNLGQAAAHYLSGALRDGNSLGLGWGTTVAAAASSVPVEPAQGLTVVSMYGGLPYSIVVNPYEIVTTF
SRRLKASQTYYIAAPMFAPSPESCRLLKSQELFRSVYARAIQVDIALIGLGELAVNATNIVLGAITREDFRSLVDAGAVG
EVFGAFVDAAGQPVDHPKNHCFMGPTLEEVRSIPLRIAAAGGPSKTAILRAALVGGFADVLVTDETTAGTLLMAETGGES

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsr operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho-AI-2, leading to the transcriptio

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=310, Percent_Identity=32.9032258064516, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI87082414, Length=312, Percent_Identity=27.8846153846154, Blast_Score=125, Evalue=4e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34205; Mature: 34074

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGYSHEERELLSRIAWAYHVNGMTQAEVADWLGVSRARVVRLLQVCRDEGFVQIIVNTD
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECC
RAVCNELERQLEAAFGLRRAIVIPAPANPRQLNHNLGQAAAHYLSGALRDGNSLGLGWGT
HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCH
TVAAAASSVPVEPAQGLTVVSMYGGLPYSIVVNPYEIVTTFSRRLKASQTYYIAAPMFAP
HHHHHHCCCCCCCCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCC
SPESCRLLKSQELFRSVYARAIQVDIALIGLGELAVNATNIVLGAITREDFRSLVDAGAV
CCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHCCHHHHEEECCCHHHHHHHHCCCCH
GEVFGAFVDAAGQPVDHPKNHCFMGPTLEEVRSIPLRIAAAGGPSKTAILRAALVGGFAD
HHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHCCHHH
VLVTDETTAGTLLMAETGGES
EEEECCCCCCEEEEECCCCCC
>Mature Secondary Structure 
SGYSHEERELLSRIAWAYHVNGMTQAEVADWLGVSRARVVRLLQVCRDEGFVQIIVNTD
CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECC
RAVCNELERQLEAAFGLRRAIVIPAPANPRQLNHNLGQAAAHYLSGALRDGNSLGLGWGT
HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCH
TVAAAASSVPVEPAQGLTVVSMYGGLPYSIVVNPYEIVTTFSRRLKASQTYYIAAPMFAP
HHHHHHCCCCCCCCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCC
SPESCRLLKSQELFRSVYARAIQVDIALIGLGELAVNATNIVLGAITREDFRSLVDAGAV
CCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHCCHHHHEEECCCHHHHHHHHCCCCH
GEVFGAFVDAAGQPVDHPKNHCFMGPTLEEVRSIPLRIAAAGGPSKTAILRAALVGGFAD
HHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHCCHHH
VLVTDETTAGTLLMAETGGES
EEEECCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA