Click here to switch to the map view.

The map label for this gene is hydB [H]

Identifier: 78355129

GI number: 78355129

Start: 77096

End: 77467

Strand: Direct

Name: hydB [H]

Synonym: Dde_0082

Alternate gene names: 78355129

Gene position: 77096-77467 (Clockwise)

Preceding gene: 78355128

Following gene: 78355131

Centisome position: 2.07

GC content: 52.42

Gene sequence:

>372_bases
ATGAGTATTGCTGCATTCACCCGTCGTCAGTTTCTGAAAGCCGGCTGCATGGCCTGCGGCGCTGCAATTGTTGGTATCCG
CTTTACCGGAAAGGCATTAGCAGCGGTCAAGCAGGTTAAAGAGTATATGACCGACCGCATAAACAGTGTCTACGCTGCGG
ACAAAACGTTTGTGCATCGGGCATCGCAGGACAACCCGCAGGTAATCAAACTGTACAAGGACTGGCTTGAACATCCTATG
AGCCATAAGGCTGAGCAGTTTCTGCACATGCACTGGACAGACCGGTCTCAGGGCATACAGAAACTGATTGCGGAACGCCA
GTATCCCAACCCCCGCGCCGGAGAATTCGGCAACGGGTATCCTTACGAATAA

Upstream 100 bases:

>100_bases
CGGAGTACTGGAAGCTATGGACCGCAAAGTTTCCAGAACCTTTGCCGGACTCAAAGAGCGTCTGAACAGAATGTCGTCCA
GCAAGGCATAGGAGGATGAA

Downstream 100 bases:

>100_bases
CCGCTGAATCCTCCGACGACCTGAAAGAAGGCCTTATCTGACTCAAGGGTCGTCTTCGTTTCCTGCCTCTTTTGCGCCGC
GCTGGTGCCGGTCGGCCACC

Product: ferredoxin hydrogenase

Products: NA

Alternate protein names: Fe hydrogenlyase small chain [H]

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSIAAFTRRQFLKAGCMACGAAIVGIRFTGKALAAVKQVKEYMTDRINSVYAADKTFVHRASQDNPQVIKLYKDWLEHPM
SHKAEQFLHMHWTDRSQGIQKLIAERQYPNPRAGEFGNGYPYE

Sequences:

>Translated_123_residues
MSIAAFTRRQFLKAGCMACGAAIVGIRFTGKALAAVKQVKEYMTDRINSVYAADKTFVHRASQDNPQVIKLYKDWLEHPM
SHKAEQFLHMHWTDRSQGIQKLIAERQYPNPRAGEFGNGYPYE
>Mature_122_residues
SIAAFTRRQFLKAGCMACGAAIVGIRFTGKALAAVKQVKEYMTDRINSVYAADKTFVHRASQDNPQVIKLYKDWLEHPMS
HKAEQFLHMHWTDRSQGIQKLIAERQYPNPRAGEFGNGYPYE

Specific function: May be involved in hydrogen uptake for the reduction of sulfate to hydrogen sulfide in an electron transport chain. Cytochrome c3 is likely to be the physiological electron carrier for the enzyme [H]

COG id: COG4624

COG function: function code R; Iron only hydrogenase large subunit, C-terminal domain

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008953
- InterPro:   IPR003149
- InterPro:   IPR006311 [H]

Pfam domain/function: PF02256 Fe_hyd_SSU [H]

EC number: =1.12.7.2 [H]

Molecular weight: Translated: 14050; Mature: 13919

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAAFTRRQFLKAGCMACGAAIVGIRFTGKALAAVKQVKEYMTDRINSVYAADKTFVHR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASQDNPQVIKLYKDWLEHPMSHKAEQFLHMHWTDRSQGIQKLIAERQYPNPRAGEFGNGY
CCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
PYE
CCC
>Mature Secondary Structure 
SIAAFTRRQFLKAGCMACGAAIVGIRFTGKALAAVKQVKEYMTDRINSVYAADKTFVHR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASQDNPQVIKLYKDWLEHPMSHKAEQFLHMHWTDRSQGIQKLIAERQYPNPRAGEFGNGY
CCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
PYE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2661538 [H]