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The map label for this gene is fliN [H]

Identifier: 78224291

GI number: 78224291

Start: 3498427

End: 3498732

Strand: Reverse

Name: fliN [H]

Synonym: Gmet_3099

Alternate gene names: 78224291

Gene position: 3498732-3498427 (Counterclockwise)

Preceding gene: 78224292

Following gene: 78224290

Centisome position: 87.52

GC content: 60.13

Gene sequence:

>306_bases
GTGAGCGACCTCGACAATGAAAACCTGAAGGATGGCGAACTGGATACCAAGAACCTGAACTTCATCCTCGACATACCGCT
GCAGCTCACGGTGGAGCTGGGGCGCACCAAGATCCTCGTGAAGGACGTTCTCCAGCTTAACCAGGGGGCGGTCGTGGAGC
TGACGAAGCTGGCGGGGGAGCCCCTCGACGTGTTTGTCAACTCCAAGCTCGTGGCCCGGGGCGAGGCGGTGGTGGTGAAC
GAGAAGTTCGGTATCCGGCTTGTGGATATCGTCAGCCCCAACGAGCGGGTGGAGAAGGTGCTGTGA

Upstream 100 bases:

>100_bases
TGAAGGTTGGGGGGGTATCGAAATTCATGTCCGCACCGGGGCTGAGGCACGGCAACAAGGCGGCGCAGATAACCACCATT
ATCGGTAAAGGGAGAGAGCA

Downstream 100 bases:

>100_bases
AACGCCTCGCCATGTCAGGGGCTGCAACGGCGGCAACACTCGTGCCGGCCGCTGCCCTGGCCGCGGACGGGCAGGGCAGC
CCGAGCCTGTTCATGCTTAC

Product: flagellar motor switch FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 101; Mature: 100

Protein sequence:

>101_residues
MSDLDNENLKDGELDTKNLNFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVARGEAVVVN
EKFGIRLVDIVSPNERVEKVL

Sequences:

>Translated_101_residues
MSDLDNENLKDGELDTKNLNFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVARGEAVVVN
EKFGIRLVDIVSPNERVEKVL
>Mature_100_residues
SDLDNENLKDGELDTKNLNFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVARGEAVVVNE
KFGIRLVDIVSPNERVEKVL

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=84, Percent_Identity=51.1904761904762, Blast_Score=103, Evalue=2e-24,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 11181; Mature: 11050

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLDNENLKDGELDTKNLNFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGE
CCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEHHHHHHHCCCCCEEEEECCCCC
PLDVFVNSKLVARGEAVVVNEKFGIRLVDIVSPNERVEKVL
CEEEEECCEEEECCCEEEEECCCCEEEEEEECCCHHHHHCC
>Mature Secondary Structure 
SDLDNENLKDGELDTKNLNFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGE
CCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEHHHHHHHCCCCCEEEEECCCCC
PLDVFVNSKLVARGEAVVVNEKFGIRLVDIVSPNERVEKVL
CEEEEECCEEEECCCEEEEECCCCEEEEEEECCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]