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The map label for this gene is yagA [C]

Identifier: 78224273

GI number: 78224273

Start: 3477079

End: 3478248

Strand: Reverse

Name: yagA [C]

Synonym: Gmet_3081

Alternate gene names: 78224273

Gene position: 3478248-3477079 (Counterclockwise)

Preceding gene: 78224274

Following gene: 78224272

Centisome position: 87.01

GC content: 51.97

Gene sequence:

>1170_bases
ATGGAAGATAAAAACAAGCAGCTTCGGGTGTTGGCCGTTCAACGGTTCAGAAACGGCGAAACCCCGGAATCAATTTGCAC
ATCACTCGGCAAGTCTCGTTCCTGGCTATACAAATGGGTTGCTCGCCAGAATGGAGATGACCCTGTATGGAGTGACGAGC
GATCCCGATGCCCACAATCCATGCCGAACCGTACAACGGCAGAGATTGAAGAAATCGTCAAAATGGTTCGCCTCAATCTC
TACAACAAGGGCTTGTTCTGTGGTGCACAGGCCATCCTGTGGGAGTTGGAGGACCTGGGTGTCAAGCCGTTGCCTTCTAC
CAGAACCATCAATCGGATTCTTGCAAGGAATGAACTGACACATCGGCGCACCGGCAAATACGAAGCCAAAGGGACGCTTT
ACCCAGTTCTGCCGTCAGCGTTGCCGAACCAGACGCACCAAGCTGATCTCGTTGGTCCATGCTATCTGACAGGGCCAATT
CGCTTCTACAGCCTGAATGTTGTCGATACAGCAACCGTCAGGTGCGGGTTGCACTCATCTCGGTCCAAAGCTGGTCAGAT
GGTCATTGACGGTTTGTGGGAAGTCTGGAAACGACTAGGCATCCCAGAACGACTCCAGGTTGACAATGCCATGTCATTCT
TCGGCAGCCCGACACATCCCCGCGGCATGGGACCACTGATTCGTCTTTGCCTGCATAACGATGTCGAACCATGGTTCATA
CCCATGGCTGAACCATGGAGAAACGGCATGATCGAAAAGTTCAACGACCGGTACCAACAACGGTTCCTCGGCAAAGTCAT
CATGACTTCAGAAGAGGAATTGAAAGTCGGCTCACTGACCTTTGAGCAGCGACACAACAGCAAGTATCGCTACAGCAAGC
TAAAGGGGAGTACGCCGCTGAAAGCACTGGCCACCTCGCATGTGCAACTGAGGTTCCCGACTGAGGATGAACCTCCCAGG
CATCGCCTGAAGAAGCCAGAAGTCGGAAAATATCATGCTGTCCGCCTTATCCGCAGTGACCTGAAGCTGAACATCTTCGG
CGAATGCTTCTCGGTTCCACCGGAGACAGCGCTTGAATACGTGGTGGCGACTATCGATGTCAAAGAACAGAAACTGAAAC
TCTTCCTGGATAAAAATCAGGTCGAGGAATTCGATTACAAACTGCGGTGA

Upstream 100 bases:

>100_bases
TGGACAGAAAAATGTGCCAGCACATCGTAGACAAAGTTCTCTGACAATCGAATAGTCGCCACGGCATTCTGTGAACACCA
CATCAAACTCGGAGGTGTTC

Downstream 100 bases:

>100_bases
TTCAGATGAGTGTCCACGATGTCATGGCACAAAAAGTTGTCCATGATGTCGTGGCACTCAACAATTAAGCATTTCCCCTT
CACCCCCGCCCCTCTCCCTC

Product: hypothetical protein

Products: NA

Alternate protein names: Integrase; Integrase Catalytic Domain-Containing Protein

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MEDKNKQLRVLAVQRFRNGETPESICTSLGKSRSWLYKWVARQNGDDPVWSDERSRCPQSMPNRTTAEIEEIVKMVRLNL
YNKGLFCGAQAILWELEDLGVKPLPSTRTINRILARNELTHRRTGKYEAKGTLYPVLPSALPNQTHQADLVGPCYLTGPI
RFYSLNVVDTATVRCGLHSSRSKAGQMVIDGLWEVWKRLGIPERLQVDNAMSFFGSPTHPRGMGPLIRLCLHNDVEPWFI
PMAEPWRNGMIEKFNDRYQQRFLGKVIMTSEEELKVGSLTFEQRHNSKYRYSKLKGSTPLKALATSHVQLRFPTEDEPPR
HRLKKPEVGKYHAVRLIRSDLKLNIFGECFSVPPETALEYVVATIDVKEQKLKLFLDKNQVEEFDYKLR

Sequences:

>Translated_389_residues
MEDKNKQLRVLAVQRFRNGETPESICTSLGKSRSWLYKWVARQNGDDPVWSDERSRCPQSMPNRTTAEIEEIVKMVRLNL
YNKGLFCGAQAILWELEDLGVKPLPSTRTINRILARNELTHRRTGKYEAKGTLYPVLPSALPNQTHQADLVGPCYLTGPI
RFYSLNVVDTATVRCGLHSSRSKAGQMVIDGLWEVWKRLGIPERLQVDNAMSFFGSPTHPRGMGPLIRLCLHNDVEPWFI
PMAEPWRNGMIEKFNDRYQQRFLGKVIMTSEEELKVGSLTFEQRHNSKYRYSKLKGSTPLKALATSHVQLRFPTEDEPPR
HRLKKPEVGKYHAVRLIRSDLKLNIFGECFSVPPETALEYVVATIDVKEQKLKLFLDKNQVEEFDYKLR
>Mature_389_residues
MEDKNKQLRVLAVQRFRNGETPESICTSLGKSRSWLYKWVARQNGDDPVWSDERSRCPQSMPNRTTAEIEEIVKMVRLNL
YNKGLFCGAQAILWELEDLGVKPLPSTRTINRILARNELTHRRTGKYEAKGTLYPVLPSALPNQTHQADLVGPCYLTGPI
RFYSLNVVDTATVRCGLHSSRSKAGQMVIDGLWEVWKRLGIPERLQVDNAMSFFGSPTHPRGMGPLIRLCLHNDVEPWFI
PMAEPWRNGMIEKFNDRYQQRFLGKVIMTSEEELKVGSLTFEQRHNSKYRYSKLKGSTPLKALATSHVQLRFPTEDEPPR
HRLKKPEVGKYHAVRLIRSDLKLNIFGECFSVPPETALEYVVATIDVKEQKLKLFLDKNQVEEFDYKLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44856; Mature: 44856

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDKNKQLRVLAVQRFRNGETPESICTSLGKSRSWLYKWVARQNGDDPVWSDERSRCPQS
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHCCCCC
MPNRTTAEIEEIVKMVRLNLYNKGLFCGAQAILWELEDLGVKPLPSTRTINRILARNELT
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
HRRTGKYEAKGTLYPVLPSALPNQTHQADLVGPCYLTGPIRFYSLNVVDTATVRCGLHSS
HHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCEEEEEEEEEEEEHEEECCCCC
RSKAGQMVIDGLWEVWKRLGIPERLQVDNAMSFFGSPTHPRGMGPLIRLCLHNDVEPWFI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEE
PMAEPWRNGMIEKFNDRYQQRFLGKVIMTSEEELKVGSLTFEQRHNSKYRYSKLKGSTPL
ECCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCEEHHHHCCCCCHHHHCCCCCCH
KALATSHVQLRFPTEDEPPRHRLKKPEVGKYHAVRLIRSDLKLNIFGECFSVPPETALEY
HHHHCCCEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCEEEEHHHHCCCHHHHHHH
VVATIDVKEQKLKLFLDKNQVEEFDYKLR
HHHEECCCHHHHHHHHCHHHHHHCCCCCC
>Mature Secondary Structure
MEDKNKQLRVLAVQRFRNGETPESICTSLGKSRSWLYKWVARQNGDDPVWSDERSRCPQS
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHCCCCC
MPNRTTAEIEEIVKMVRLNLYNKGLFCGAQAILWELEDLGVKPLPSTRTINRILARNELT
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
HRRTGKYEAKGTLYPVLPSALPNQTHQADLVGPCYLTGPIRFYSLNVVDTATVRCGLHSS
HHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCEEEEEEEEEEEEHEEECCCCC
RSKAGQMVIDGLWEVWKRLGIPERLQVDNAMSFFGSPTHPRGMGPLIRLCLHNDVEPWFI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEE
PMAEPWRNGMIEKFNDRYQQRFLGKVIMTSEEELKVGSLTFEQRHNSKYRYSKLKGSTPL
ECCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCEEHHHHCCCCCHHHHCCCCCCH
KALATSHVQLRFPTEDEPPRHRLKKPEVGKYHAVRLIRSDLKLNIFGECFSVPPETALEY
HHHHCCCEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCEEEEHHHHCCCHHHHHHH
VVATIDVKEQKLKLFLDKNQVEEFDYKLR
HHHEECCCHHHHHHHHCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA